Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq252 116 6e-21 seq3469 105 1e-17 seq3275 105 1e-17 >seq252 Length=132080 Score = 116 bits (128), Expect = 6e-21 Identities = 113/143 (79%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 |||| || || | ||||||||||| ||||||||||| || | || ||||| | || | Sbjct 9165 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA- 9107 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 ||||| ||| ||||||| |||| |||||| ||| ||| |||||||||||||| ||||| Sbjct 9106 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 9047 Query 146151 CAAAGACTCATTTTTGCAGGTAA 146173 ||| || | || ||||| ||||| Sbjct 9046 CAACGATTGATATTTGCTGGTAA 9024 Score = 114 bits (126), Expect = 2e-20 Identities = 110/141 (78%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || | ||||||||||| ||||||||||| || | || ||||| | | Sbjct 8878 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 8819 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||||||||||| |||||| ||| ||| |||||||||||||| ||||| | Sbjct 8818 ATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAGC 8759 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 || || | || ||||| |||| Sbjct 8758 AACGATTGATATTTGCTGGTA 8738 Score = 98.7 bits (108), Expect = 2e-15 Identities = 109/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 |||| |||||| | || ||| | || |||||||| || || | || || |||| || | Sbjct 9847 TGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA- 9789 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || ||||||| |||| |||||| || ||| ||||||||||| || ||||| Sbjct 9788 GACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 9729 Query 146151 CAAAGACTCATTTTTGCAGGTAA 146173 |||||| | || ||||||||||| Sbjct 9728 CAAAGATTAATCTTTGCAGGTAA 9706 >seq3469 Length=14404 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| || ||||||||||| ||||| |||| || || | | Sbjct 7324 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 7265 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||||||||||| || || ||| ||||||||||| ||||| ||||||| Sbjct 7264 ATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAAC 7205 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | || |||||||| |||| Sbjct 7204 AGCGGCTTATTTTTGCTGGTA 7184 Score = 100 bits (110), Expect = 4e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || ||||||||||| ||| | || ||||||| | Sbjct 6690 TGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 6631 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| |||||||| ||| ||||| |||||||| ||||||| Sbjct 6630 ATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAAC 6571 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179 || | | |||||||| ||| | || || Sbjct 6570 AACGTTTGATTTTTGCTGGTGAGCAGTT 6543 Score = 89.7 bits (98), Expect = 8e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || || ||||| |||||| | || || |||| | Sbjct 7656 TGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCTCAG 7597 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || || ||||||| || |||||| || |||||| || |||||||||||||||| Sbjct 7596 ACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 7537 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || | || |||||||| ||||| Sbjct 7536 AACGTCTGATTTTTGCTGGTAA 7515 >seq3275 Length=16498 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| || ||||||||||| ||||| |||| || || | | Sbjct 7128 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 7187 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| |||||||||||| || || ||| ||||||||||| ||||| ||||||| Sbjct 7188 ATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAAC 7247 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | || |||||||| |||| Sbjct 7248 AGCGGCTTATTTTTGCTGGTA 7268 Score = 100 bits (110), Expect = 4e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || | || ||||||||||| ||| | || ||||||| | Sbjct 7762 TGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 7821 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| ||| |||||||| ||| ||||| |||||||| ||||||| Sbjct 7822 ATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAAC 7881 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179 || | | |||||||| ||| | || || Sbjct 7882 AACGTTTGATTTTTGCTGGTGAGCAGTT 7909 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || || ||||| |||||| | || || |||| | Sbjct 6796 TGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCTG 6855 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || |||||| || |||||| || |||||||||||||||| Sbjct 6856 ACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 6915 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || | || |||||||| ||||| Sbjct 6916 AACGTCTGATTTTTGCTGGTAA 6937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786122738283560