Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_023426.1
Length=245717
Score E
Sequences producing significant alignments: (Bits) Value
seq252 116 6e-21
seq3469 105 1e-17
seq3275 105 1e-17
>seq252
Length=132080
Score = 116 bits (128), Expect = 6e-21
Identities = 113/143 (79%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090
|||| || || | ||||||||||| ||||||||||| || | || ||||| | || |
Sbjct 9165 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA- 9107
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
||||| ||| ||||||| |||| |||||| ||| ||| |||||||||||||| |||||
Sbjct 9106 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 9047
Query 146151 CAAAGACTCATTTTTGCAGGTAA 146173
||| || | || ||||| |||||
Sbjct 9046 CAACGATTGATATTTGCTGGTAA 9024
Score = 114 bits (126), Expect = 2e-20
Identities = 110/141 (78%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| || || | ||||||||||| ||||||||||| || | || ||||| | |
Sbjct 8878 TGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 8819
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||||||||||| |||||| ||| ||| |||||||||||||| ||||| |
Sbjct 8818 ATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAGC 8759
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
|| || | || ||||| ||||
Sbjct 8758 AACGATTGATATTTGCTGGTA 8738
Score = 98.7 bits (108), Expect = 2e-15
Identities = 109/143 (76%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090
|||| |||||| | || ||| | || |||||||| || || | || || |||| || |
Sbjct 9847 TGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA- 9789
Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150
|| || || ||||||| |||| |||||| || ||| ||||||||||| || |||||
Sbjct 9788 GACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 9729
Query 146151 CAAAGACTCATTTTTGCAGGTAA 146173
|||||| | || |||||||||||
Sbjct 9728 CAAAGATTAATCTTTGCAGGTAA 9706
>seq3469
Length=14404
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| || ||||||||||| ||||| |||| || || | |
Sbjct 7324 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 7265
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||||||||||| || || ||| ||||||||||| ||||| |||||||
Sbjct 7264 ATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAAC 7205
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
| | || |||||||| ||||
Sbjct 7204 AGCGGCTTATTTTTGCTGGTA 7184
Score = 100 bits (110), Expect = 4e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | || || | || ||||||||||| ||| | || ||||||| |
Sbjct 6690 TGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 6631
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| ||||||| ||| |||||||| ||| ||||| |||||||| |||||||
Sbjct 6630 ATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAAC 6571
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179
|| | | |||||||| ||| | || ||
Sbjct 6570 AACGTTTGATTTTTGCTGGTGAGCAGTT 6543
Score = 89.7 bits (98), Expect = 8e-13
Identities = 105/142 (74%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| | || || ||||| |||||| | || || |||| |
Sbjct 7656 TGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCTCAG 7597
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || || ||||||| || |||||| || |||||| || ||||||||||||||||
Sbjct 7596 ACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 7537
Query 146152 AAAGACTCATTTTTGCAGGTAA 146173
|| | || |||||||| |||||
Sbjct 7536 AACGTCTGATTTTTGCTGGTAA 7515
>seq3275
Length=16498
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| || ||||||||||| ||||| |||| || || | |
Sbjct 7128 TGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 7187
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| |||||||||||| || || ||| ||||||||||| ||||| |||||||
Sbjct 7188 ATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAAC 7247
Query 146152 AAAGACTCATTTTTGCAGGTA 146172
| | || |||||||| ||||
Sbjct 7248 AGCGGCTTATTTTTGCTGGTA 7268
Score = 100 bits (110), Expect = 4e-16
Identities = 111/148 (75%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
||||||| ||| | || || | || ||||||||||| ||| | || ||||||| |
Sbjct 7762 TGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATCTG 7821
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
|||| ||| ||||||| ||| |||||||| ||| ||||| |||||||| |||||||
Sbjct 7822 ATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAAC 7881
Query 146152 AAAGACTCATTTTTGCAGGTAAACAATT 146179
|| | | |||||||| ||| | || ||
Sbjct 7882 AACGTTTGATTTTTGCTGGTGAGCAGTT 7909
Score = 95.1 bits (104), Expect = 2e-14
Identities = 106/142 (75%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091
|||| ||||| | ||||| | || || ||||| |||||| | || || |||| |
Sbjct 6796 TGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCTG 6855
Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151
| || ||| ||||||| || |||||| || |||||| || ||||||||||||||||
Sbjct 6856 ACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 6915
Query 146152 AAAGACTCATTTTTGCAGGTAA 146173
|| | || |||||||| |||||
Sbjct 6916 AACGTCTGATTTTTGCTGGTAA 6937
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 786122738283560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |