Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq3935 345 3e-89
seq867 141 7e-28
seq1626 111 1e-18
>seq3935
Length=392680
Score = 345 bits (382), Expect = 3e-89
Identities = 497/701 (71%), Gaps = 0/701 (0%)
Strand=Plus/Minus
Query 282180 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 282239
|||| | ||||| || || || ||||| ||||| | ||| | || | |||| | |
Sbjct 362078 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGA 362019
Query 282240 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATAT 282299
| | |||| |||||||| | | ||||| || |||||| || |||||||| | |
Sbjct 362018 CCTCAAAAATGCCATCTTCGATGGTCAAAATAGACACATCAAAAGTACCACCACCAAGGT 361959
Query 282300 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 282359
|||| || || ||||| ||| | | ||| ||||||| ||||| |||| ||||
Sbjct 361958 CAAATATCAGAACATTTCGTTCACCGCCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 361899
Query 282360 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 282419
| || |||||||| || || || | ||||||||| | ||||| ||| |||| || ||||
Sbjct 361898 CCGCTGTTGGTTCGTTGATGATACGCAAAACATTCAAACCAGAAATCGTTCCAGCGTCTT 361839
Query 282420 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA 282479
| || || || | || ||||||||||||||||| ||||||||||| |||||||| | |
Sbjct 361838 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCCGGAACAGTAATTACGGCATCCTTAA 361779
Query 282480 CTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 282539
| |||||| | |||||| || |||| ||||| || ||| | ||| | |
Sbjct 361778 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCACTGA 361719
Query 282540 TTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 282599
||| |||||| | | || ||| || || || ||| |||| || | ||||||
Sbjct 361718 TTTCTTCTGGTGTAAATGACTTCGACTCGCCTTTGTATTCGACTTGAATTTTTGGTTTCG 361659
Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCAT 282659
||| | || |||| ||| |||||||||| ||||||||| || || || ||||
Sbjct 361658 ATCCATCGTTGATAATTTTGAATGGCCAATGTTTCATATCAGACTGCACCGCAGCATCAT 361599
Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAG 282719
||| | ||| || | ||| || |||||||||| ||||| ||||| | |||
Sbjct 361598 CAAATCGACGACCGATGAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 361539
Query 282720 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 282779
|||||| ||| || ||||||||||||| |||| || || || || | |||||| ||
Sbjct 361538 CTTGATTTTTTGCCGCATCTCCAATCAATCGTTCGGTATCGGTGAAAGCAACATAACTTG 361479
Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839
| || || ||||| |||||||| || |||||||||||||||||||||| || | || |
Sbjct 361478 GCGTGGTACGATTCCCTTGATCGTTGGCAATAATTTCAACTTTACCATGCTGGAACACGC 361419
Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880
| |||||||| | || || || |||||||| |||||||||
Sbjct 361418 CAACACAACTGTACGTAGTACCCAAATCAATTCCAATAGCA 361378
Score = 114 bits (126), Expect = 1e-19
Identities = 196/282 (70%), Gaps = 2/282 (1%)
Strand=Plus/Minus
Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830
||| | || ||||| ||||||||||| || ||||| | ||| || |||| ||| |||
Sbjct 362547 ATACCTGCTCCATAGGCAACAGCTTCGTCGGGATTGATGCTTTTGTTAAGTTCTTTCCCA 362488
Query 281831 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 281889
|| ||||||| ||| || || || | || |||||||| |||| || || || || ||
Sbjct 362487 TTAAAAAAATCTTGCAACAACTTCT-GAACTTTAGGAATGCGAGTAGAACCGCCCACCAA 362429
Query 281890 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949
|||| |||||| | | || ||| || | ||| | ||| | | ||||||| || ||
Sbjct 362428 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 362369
Query 281950 TTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 282009
||| | | || | |||||||| | | | |||||||| |||||| |||| |||
Sbjct 362368 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGT 362309
Query 282010 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 282051
| | ||||||| |||||| | | ||||| ||||||
Sbjct 362308 GGTGTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 362267
>seq867
Length=98256
Score = 141 bits (156), Expect = 7e-28
Identities = 317/469 (68%), Gaps = 13/469 (3%)
Strand=Plus/Plus
Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427
||||| || || |||| | |||||||||||||||||| | ||||||||||| || |||
Sbjct 53385 GGTTCGTTGATGATTCGAACAACATTAAGACCAGCAATGGTACCTGCATCTTTGGTAGCT 53444
Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487
|| | ||||| |||||| ||||| || ||||| || | ||||||| | | ||||||||
Sbjct 53445 TGACGTTGTGCATCGTTGAAATAAGCTGGAACCGTGACGACGGCATTTTTCACTTCTTTG 53504
Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547
|| | |||||| || ||| ||||||||| |||| ||| | |||||||| |||
Sbjct 53505 CCCAAATAAGCCTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 53564
Query 282548 GGAG---AATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 282604
|||| | ||| ||| |||| | | | | | || | ||||| | | |
Sbjct 53565 GGAGTGAACAATTTCTT---TTCACCGTTAACAGTAAGCTGAACGTTCGGTTTGCT-CGA 53620
Query 282605 ACATT-AATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAA 282663
|| || || ||||||||| ||| ||| | ||||| ||| | || |
Sbjct 53621 TTTTTCAACCACCGCAAATGGCCACATTTTACGATCCGCTTGAAGACTCTTATCCGACCA 53680
Query 282664 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG-CAGCTT 282722
|||| ||| | | || |||||||| || | ||||| ||||| | || | |
Sbjct 53681 TTCTCGACCGACCATACGCTTTGCATCGAATACCGTATTCTCAGGATTGGTGGTCAAC-T 53739
Query 282723 GATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGATG 282779
||| ||| || || || || |||||| | | || | ||||| | ||||| || |
Sbjct 53740 GATTTTTCGCGGCGTCGCCGATCAGACGCTCCCCTTCCGGCGTAAAAGCTACATACGACG 53799
Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATT 282828
| || | ||||| || |||||||| |||||||||||||| ||||||
Sbjct 53800 GGGTGATTCGATTGCCCTGATCATTAGCAATAATTTCAACACGACCATT 53848
>seq1626
Length=71196
Score = 111 bits (122), Expect = 1e-18
Identities = 125/167 (75%), Gaps = 3/167 (2%)
Strand=Plus/Plus
Query 607617 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 607676
||| | |||||||| ||||||||||| ||| | ||| || | |||| | | ||||||
Sbjct 35415 TATATATGTGGTACAGATGAATATGGGACTGCCACAGAGACAAAAGCTATTGAAGAAGGT 35474
Query 607677 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 607736
|||||| | | | || |||||||| |||| ||| || || |||||||||| |||
Sbjct 35475 GTAACTCCTATTCAGCTGTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 35534
Query 607737 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACA 607783
|||||||| |||||||| ||||||| | | | |||||||||||
Sbjct 35535 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAAAACA 35578
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740412267476118
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |