Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq252 129 1e-24
seq3469 127 4e-24
seq3275 127 4e-24
seq273 123 5e-23
seq316 89.7 1e-12
>seq252
Length=132080
Score = 129 bits (142), Expect = 1e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | || ||| ||||| || || || ||||||||||||||||| || |
Sbjct 8740 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 8799
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
||||||||||||||||||||| || ||||||||||| || || || || || || ||
Sbjct 8800 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 8859
Query 82791 GTCTTTACAAATATCTGCATT 82811
|| || ||||| |||||||||
Sbjct 8860 GTTTTCACAAAAATCTGCATT 8880
Score = 122 bits (134), Expect = 2e-22
Identities = 115/144 (80%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | || ||| ||||| || || || ||||||||||||||||| |||
Sbjct 9024 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAAT-TTT 9082
Query 82728 GCTTTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
||||| ||||||||||||||||| || ||||||||||| || || || || || ||
Sbjct 9083 ACTTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGT 9142
Query 82787 CAACGTCTTTACAAATATCTGCAT 82810
|| || || ||||| ||||||||
Sbjct 9143 TAATGTTTTCACAAAAATCTGCAT 9166
Score = 116 bits (128), Expect = 7e-21
Identities = 116/148 (78%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| || |||||||||| |||||| ||||| ||||| || ||||||||||| ||||| |||
Sbjct 9706 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 9764
Query 82728 GCTTTT-ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
||||| |||||||| || || || ||||| ||||| | ||||| || || || ||
Sbjct 9765 ACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 9824
Query 82787 CAACGTCTTTACAAATATCTGCATTATT 82814
| ||||| || ||||||||||| |||
Sbjct 9825 AAGTGTCTTCACGAATATCTGCATAATT 9852
>seq3469
Length=14404
Score = 127 bits (140), Expect = 4e-24
Identities = 112/140 (80%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||||||||||| || || ||||| || ||||||||||| |
Sbjct 7186 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 7245
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||||||||| ||||| || || ||||| | || ||||| || |||||||||
Sbjct 7246 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 7305
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || ||||||||||||||
Sbjct 7306 GTTTTCACAAATATCTGCAT 7325
Score = 123 bits (136), Expect = 5e-23
Identities = 112/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | | ||||||||| || || |||||||||||||| || || || ||
Sbjct 6552 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 6611
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||||||||| |||||| |||||||||||||||||||| || || || || |
Sbjct 6612 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 6671
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| || || || ||||||
Sbjct 6672 GTCTTAACGAAAATTTGCATT 6692
Score = 120 bits (132), Expect = 6e-22
Identities = 113/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | | ||| ||||| || || |||||||||||||| || || ||
Sbjct 6269 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 6328
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||||||||| || || |||||| |||||||||||||| || ||||| ||||| ||
Sbjct 6329 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 6388
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| ||||| ||||| || ||||||
Sbjct 6389 AGAGTCTTAACAAAAATTTGCATT 6412
Score = 107 bits (118), Expect = 4e-18
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || || | ||||||||| || || ||||| || ||||| ||||| ||
Sbjct 7515 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 7574
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
| || |||||||||| || || ||||| ||||||| ||| || || || || |||
Sbjct 7575 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 7634
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| || || |||||||||||||||
Sbjct 7635 AGAGTTTTGACAAATATCTGCATT 7658
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | | ||| |||||||| || ||||| || ||||| || || || ||
Sbjct 5989 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 6048
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| ||||||||||| || || ||||| ||||| || |
Sbjct 6049 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 6108
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| || || || ||||||
Sbjct 6109 GTCTTAACGAAAATTTGCATT 6129
>seq3275
Length=16498
Score = 127 bits (140), Expect = 4e-24
Identities = 112/140 (80%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | ||||||||||| || || ||||| || ||||||||||| |
Sbjct 7266 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 7207
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||||||||| ||||| || || ||||| | || ||||| || |||||||||
Sbjct 7206 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 7147
Query 82791 GTCTTTACAAATATCTGCAT 82810
|| || ||||||||||||||
Sbjct 7146 GTTTTCACAAATATCTGCAT 7127
Score = 125 bits (138), Expect = 1e-23
Identities = 114/144 (79%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || | | ||||||||| || || |||||||||||||| || || ||
Sbjct 8183 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 8124
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
|||||||||| || || |||||| |||||||||||||| || ||||| ||||| ||
Sbjct 8123 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 8064
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| ||||| ||||| || ||||||
Sbjct 8063 AGAGTCTTAACAAAAATTTGCATT 8040
Score = 123 bits (136), Expect = 5e-23
Identities = 112/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | | ||||||||| || || |||||||||||||| || || || ||
Sbjct 7900 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 7841
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||||||||| |||||| |||||||||||||||||||| || || || || |
Sbjct 7840 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 7781
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| || || || ||||||
Sbjct 7780 GTCTTAACGAAAATTTGCATT 7760
Score = 116 bits (128), Expect = 7e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
|| |||||||| || || | ||||||||| || || ||||| || ||||| ||||| ||
Sbjct 6937 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 6878
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787
| || ||||||||||| || ||| ||||| ||||||| ||| || || || || |||
Sbjct 6877 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 6818
Query 82788 AACGTCTTTACAAATATCTGCATT 82811
| || || |||||||||||||||
Sbjct 6817 AGAGTTTTCACAAATATCTGCATT 6794
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || | | ||| |||||||| || ||||| || ||||| || || || ||
Sbjct 8462 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 8403
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|||||||| || || |||||| ||||||||||| || || ||||| ||||| || |
Sbjct 8402 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 8343
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| || || || ||||||
Sbjct 8342 GTCTTAACGAAAATTTGCATT 8322
>seq273
Length=128786
Score = 123 bits (136), Expect = 5e-23
Identities = 112/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 82671 CCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCT 82730
|||||||| || || | |||||||||||||| ||||| ||||||||||||||||| ||
Sbjct 111631 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 111572
Query 82731 TTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAAC 82790
|| ||||| |||| |||||| ||||| |||||||| || || || || || || |
Sbjct 111571 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 111512
Query 82791 GTCTTTACAAATATCTGCATT 82811
||||| ||||| || ||||||
Sbjct 111511 GTCTTAACAAAAATTTGCATT 111491
>seq316
Length=123628
Score = 89.7 bits (98), Expect = 1e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766
|||||||| || ||||| || || || ||||| | ||| |||||| ||| || ||||||
Sbjct 46683 CCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTGAATTGTATCAGAAGGCTCCACTTCC 46742
Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || ||||| ||||| | || || |||||||| |||||
Sbjct 46743 AAAGTGATGGTCTTTCCTGTTAGGGTTTTCACAAATATTTGCAT 46786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981771308566177
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |