Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq513 86.0 8e-12
seq462 86.0 8e-12
seq348 86.0 8e-12
seq61 86.0 8e-12
>seq513
Length=320759
Score = 86.0 bits (94), Expect = 8e-12
Identities = 64/75 (85%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 199966 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 200025
Query 8718 CCCGACGAGGAGCAG 8732
|| | || |||| ||
Sbjct 200026 CCGGCCGGGGAGAAG 200040
>seq462
Length=117134
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 45704 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 45645
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 45644 CCGGCCGGGGAG 45633
Score = 82.4 bits (90), Expect = 1e-10
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand=Plus/Minus
Query 11727 CAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGA 11785
||||||||| |||||||||||| ||||| |||| ||||| | |||| |||| ||||||||
Sbjct 45707 CAGTCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGA 45648
Query 11786 TTCCCCGACGAGGAG 11800
||||| | || ||||
Sbjct 45647 TTCCCGGCCGGGGAG 45633
>seq348
Length=122565
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 50247 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 50306
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 50307 CCGGCCGGGGAG 50318
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 50944 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 51003
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 51004 CCGGCCGGGGAG 51015
>seq61
Length=144527
Score = 86.0 bits (94), Expect = 8e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
|||||| |||||||||||| |||||||||| ||||| | |||| |||| |||||||||||
Sbjct 121532 TCCTCGGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGCGACCCGGGTTCGATTC 121591
Query 8718 CCCGACGAGGAG 8729
|| | || ||||
Sbjct 121592 CCGGCCGGGGAG 121603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652808542631920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |