Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq203 132 7e-25
>seq203
Length=339139
Score = 132 bits (146), Expect = 7e-25
Identities = 237/338 (70%), Gaps = 10/338 (3%)
Strand=Plus/Plus
Query 1455979 GAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTAC 1456038
||||||||||| || || || ||||| || ||||| ||||| |||| || |||| |||
Sbjct 23368 GAGGCACGTTTTTTCTATGGCTTCCAAATTGCCATAGAAAATGTCCATTCCGAAATGTAC 23427
Query 1456039 TCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCC 1456098
||| |||||||||||||| || || ||||| ||| || || || |||
Sbjct 23428 AGCCTCTTGATCGACACCTACATCCGTGATCCGGTGGAGCGTGATTTTCTGTTCAACGCG 23487
Query 1456099 ATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAG 1456158
||||| || | |||| |||| |||||| || |||||||| || ||||| |
Sbjct 23488 ATCGAGACCATTCCGTGCGTGAAGAAAAAAGCAGACTGGGCTTTGCGCTGGAT---CGGT 23544
Query 1456159 GAGGGCC--TCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATCTT 1456215
|| | | ||| || |||| ||| || | |||| || || || || || ||||| ||
Sbjct 23545 GACCGTCAGTCGCCATTTTG-CGAACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTT 23603
Query 1456216 TTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTC 1456274
|| || ||||| ||| ||| | || || ||| | || ||||||||||| |||||||||
Sbjct 23604 CTTTTCCGGCAGCTTC-GCGTCAATTTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGT- 23661
Query 1456275 TTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAGT 1456312
|| || |||||||| | ||| ||| ||||| ||
Sbjct 23662 TTGACGTTCAGCAACGAGCTGATCTCTCGTGACGAGGT 23699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177382664483766
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |