Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3469 109 6e-19 seq3275 105 7e-18 seq203 96.9 4e-15 seq273 87.8 2e-12 seq252 84.2 2e-11 >seq3469 Length=14404 Score = 109 bits (120), Expect = 6e-19 Identities = 111/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||| ||| || |||||||| || || || ||||| || |||||||| Sbjct 7515 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 7574 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | |||||| || | |||||| || |||||||||||||| ||||| Sbjct 7575 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 7634 Query 134691 AAAGTTTTAACGAAAATTTGCATTT 134715 | |||||| || || || ||||||| Sbjct 7635 AGAGTTTTGACAAATATCTGCATTT 7659 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||||||| |||||||| || || || || ||||| || || ||||| | Sbjct 5989 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 6048 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | || || ||||| ||||| | | Sbjct 6049 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 6108 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 6109 GTCTTAACGAAAATTTGCATT 6129 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||||||| |||||||| || || || ||||| || || || ||||| Sbjct 6269 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 6328 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || || | ||| || || | || || ||||| ||||| Sbjct 6329 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 6388 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | ||| ||||| |||||||||||| Sbjct 6389 AGAGTCTTAACAAAAATTTGCATT 6412 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||||||| || ||||| || || || ||||| || || || ||||| | Sbjct 6552 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 6611 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | ||| || ||||| || || | Sbjct 6612 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 6671 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 6672 GTCTTAACGAAAATTTGCATT 6692 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| | ||||| ||||| || || ||||||||||| |||||||| || | Sbjct 7186 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 7245 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || |||| || || || || ||||| ||||| || || || Sbjct 7246 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 7305 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || || || ||||| Sbjct 7306 GTTTTCACAAATATCTGCAT 7325 >seq3275 Length=16498 Score = 105 bits (116), Expect = 7e-18 Identities = 111/146 (76%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||| ||| || |||||||| || || || ||||| || |||||||| Sbjct 6937 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 6878 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | |||||| || | |||||| || |||||||||||||| || || Sbjct 6877 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 6818 Query 134691 AAAGTTTTAACGAAAATTTGCATTTT 134716 | |||||| || || || |||||||| Sbjct 6817 AGAGTTTTCACAAATATCTGCATTTT 6792 Score = 96.9 bits (106), Expect = 4e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||||||| |||||||| || || || || ||||| || || ||||| | Sbjct 8462 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 8403 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | || || ||||| ||||| | | Sbjct 8402 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 8343 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 8342 GTCTTAACGAAAATTTGCATT 8322 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||||||| || ||||| || || || ||||| || || || ||||| Sbjct 8183 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 8124 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || || | ||| || || | || || ||||| ||||| Sbjct 8123 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 8064 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | ||| ||||| |||||||||||| Sbjct 8063 AGAGTCTTAACAAAAATTTGCATT 8040 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||||||| || ||||| || || || ||||| || || || ||||| | Sbjct 7900 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 7841 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || || | ||| || || | ||| || ||||| || || | Sbjct 7840 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 7781 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || |||||||||||||||||| Sbjct 7780 GTCTTAACGAAAATTTGCATT 7760 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| | ||||| ||||| || || ||||||||||| |||||||| || | Sbjct 7266 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 7207 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || |||| || || || || ||||| ||||| || || || Sbjct 7206 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 7147 Query 134694 GTTTTAACGAAAATTTGCAT 134713 ||||| || || || ||||| Sbjct 7146 GTTTTCACAAATATCTGCAT 7127 >seq203 Length=339139 Score = 96.9 bits (106), Expect = 4e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 21743 CCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGACCGGGCATTAAACCTCGATTTT 21802 ||||||| || || |||| |||||||||||||| | ||||||||| | || || |||| Sbjct 23698 CCTCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTT 23639 Query 21803 TAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaaaaCACGCCCTCCACAATGGCGAACG 21862 | | | ||||||| ||| ||||| |||||||| || | ||| || ||| ||||||| Sbjct 23638 TCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGAACG 23579 Query 21863 CCACCA 21868 | |||| Sbjct 23578 CGACCA 23573 >seq273 Length=128786 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||| |||||| ||||| || || || || || || |||||||| || | Sbjct 111631 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 111572 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || || || | |||||| || | || |||||||| || |||| Sbjct 111571 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 111512 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||| Sbjct 111511 GTCTTAACAAAAATTTGCATT 111491 >seq252 Length=132080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| ||||| || |||||||| || || |||||||| || ||||||||||| | Sbjct 8740 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 8799 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || || || | || || || | || || ||||| || ||||| Sbjct 8800 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 8859 Query 134694 GTTTTAACGAAAATTTGCATT 134714 ||||| || ||||| |||||| Sbjct 8860 GTTTTCACAAAAATCTGCATT 8880 Score = 82.4 bits (90), Expect = 8e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||| || |||||||| || || |||||||| || ||||||||||| Sbjct 9024 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9083 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | || || || | || || || | || || ||||| || ||| Sbjct 9084 CTTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9143 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||| ||||| Sbjct 9144 AATGTTTTCACAAAAATCTGCAT 9166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505370331436360