Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq3469 96.9 3e-15 seq3275 91.5 1e-13 seq203 84.2 2e-11 >seq3469 Length=14404 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || |||| ||||| |||||||| || || | ||||||||||| || || Sbjct 7515 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 7574 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 |||| |||| || ||||||| || ||| ||||| ||||| || | ||| || ||| Sbjct 7575 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 7634 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 |||||||| ||||| || ||||| Sbjct 7635 AGAGTTTTGACAAATATCTGCAT 7657 >seq3275 Length=16498 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || |||| ||||| |||||||| || || | ||||||||||| || || Sbjct 6937 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 6878 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 |||| |||| | ||||| | || ||| ||||| ||||| || | ||| || ||| Sbjct 6877 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 6818 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 |||||||||||||| || ||||| Sbjct 6817 AGAGTTTTCACAAATATCTGCAT 6795 >seq203 Length=339139 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 108257 TCTTGTACTCGCCGACGCGTCTTTCGAAAAAGTTGGTTTTGCCTTCTAGCGAAATCATGT 108316 ||| ||| |||||||||||| ||||||||||||| ||||| ||||| |||||||||| | Sbjct 24177 TCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTCCAGCGAAATCAATT 24118 Query 108317 TCATAAAATGAAAGGGATT 108335 |||||| | || ||||| Sbjct 24117 CCATAAAGTCGAACGGATT 24099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424911390200616