Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_028094.1
Length=473558
Score E
Sequences producing significant alignments: (Bits) Value
seq3935 369 1e-96
seq252 156 1e-32
seq867 152 2e-31
seq3275 138 3e-27
seq3469 134 4e-26
seq273 120 9e-22
seq316 98.7 3e-15
seq4000 89.7 2e-12
>seq3935
Length=392680
Score = 369 bits (408), Expect = 1e-96
Identities = 566/804 (70%), Gaps = 5/804 (1%)
Strand=Plus/Plus
Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258
||||| ||||| ||||| |||||||| || |||||||| || | || ||| |
Sbjct 361379 GCTATTGGAATTGATTTGGGTACTACGTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 361438
Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318
|| ||||| ||||| || |||||||| || | || |||||| || ||||| || |||
Sbjct 361439 GTTGAAATTATTGCCAACGATCAAGGGAATCGTACCACGCCAAGTTATGTTGCTTTCACC 361498
Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378
|| || || || ||||||| ||| | ||||||||||||| ||| ||||| | |||
Sbjct 361499 GATACCGAACGATTGATTGGAGATGCGGCAAAAAATCAAGTTGCGTTGAATCCTCATAAT 361558
Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438
|| ||||||||||| |||||||| || ||| | | ||| ||| | || |||
Sbjct 361559 ACAGTTTTTGATGCGAAGCGACTCATCGGTCGTCGATTTGATGATGCTGCGGTGCAGTCT 361618
Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498
||| | ||||||| || || | || | || || || ||||||| ||| |
Sbjct 361619 GATATGAAACATTGGCCATTCAAAATTATC---AACGATGGATCGAAACCAAAAATTCAA 361675
Query 349499 GTTGAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTA 349558
|| ||||| ||||| || || |||| ||| |||||||| | ||||| |||
Sbjct 361676 GTCGAATACAAAGGCGAGTCGAAGTCATTTACACCAGAAGAAATCAGTGCTATGGTGTTA 361735
Query 349559 GTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATT 349618
|| || |||||||||| ||| ||||| ||||| || |||| || | ||||| || |||
Sbjct 361736 GTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGATGCCGTAATT 361795
Query 349619 ACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATT 349678
||||| || || |||||||| ||| | |||||| || || ||||| ||||| | |||
Sbjct 361796 ACTGTTCCGGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGATT 361855
Query 349679 GCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGG 349738
| || || |||||| | | || || || ||||| || || || |||||||| |||||
Sbjct 361856 TCTGGTTTGAATGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATGGA 361915
Query 349739 CTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACT 349798
||||||| || | ||| | ||| |||| |||| || ||||| | ||||||||||||
Sbjct 361916 CTTGATAGAAAGGGTGGCGGTGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGTACT 361975
Query 349799 TTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGT 349858
|||||||| || | | || | ||||| || |||||||| || || | || ||||||
Sbjct 361976 TTTGATGTGTCTATTTTGACCATCGAAGATGGCATTTTTGAGGTCAAGTCTACCGCTGGT 362035
Query 349859 GATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAA 349918
|| || ||| | ||||| || || || || ||||| | || ||||| || ||
Sbjct 362036 GACACTCATTTGGGTGGTGAGGACTTCGACAATCGCATGGTAAATCATTTCGTGGCCGAG 362095
Query 349919 TTTAAGCGTCAAG-CTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977
|||||||| |||| || | || || | |||||| | ||| |||||||| | |
Sbjct 362096 TTTAAGCG-CAAGAACAAGAAGGACATGTCATCTAATCCACGCGCATTGCGTCGCTTGCG 362154
Query 349978 AACTGCGTGTGAACGTGCTAAGCG 350001
|| || |||||||| || |||||
Sbjct 362155 CACAGCTTGTGAACGAGCGAAGCG 362178
Score = 107 bits (118), Expect = 6e-18
Identities = 191/277 (69%), Gaps = 4/277 (1%)
Strand=Plus/Plus
Query 350030 ATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGG 350089
|||||||||||| || || |||| ||||||| | |||||||| | |||||
Sbjct 362267 ATTGAAATTGATAGCCTCTACGAAGGCATTGATTTCTACACCACTATTACAAGAGCTCGC 362326
Query 350090 TTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTAT 350147
|| ||||| || | ||| || | || | | || |||| || || |||||||
Sbjct 362327 TTCGAAGAGTT--GAATGCTGACTTGTTCCGTTCTACTTTGGAACCAGTAGAAAAAGCTC 362384
Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207
| ||||| ||| | |||| |||| ||||||| ||||| || || |||||||
Sbjct 362385 TTCGTGATGCGAAATTAGACAAAGCAGTGATTCATGAAGTTGTTTTGGTGGGCGGTTCTA 362444
Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTA 350267
| || ||||| |||||||| |||| | || ||||||||||| ||||||| | |
Sbjct 362445 CTCGCATTCCTAAAGTTCAGAAGTTGTTGCAAGATTTTTTTAATGGGAAAGAACTTAACA 362504
Query 350268 GATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304
| || ||||| || ||||||||||| ||||| ||
Sbjct 362505 AAAGCATCAATCCCGACGAAGCTGTTGCCTATGGAGC 362541
Score = 96.9 bits (106), Expect = 1e-14
Identities = 154/221 (70%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 183570 TTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATCTGTAATATCT 183629
|| ||||||||||| ||||| | | ||||| |||| | ||||||| || || ||
Sbjct 362175 TTCGCTCGTTCACAAGCTGTGCGCAAGCGACGCAATGCGCGTGGATTAGATGACATGTCC 362116
Query 183630 TGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTATCAAAATCT 183689
| || | || | ||||| || | | ||||| | | | | | || || ||
Sbjct 362115 TTCTTGTTCTTGCGCTTAAACTCGGCCACGAAATGATTTACCATGCGATTGTCGAAGTCC 362056
Query 183690 TCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCGTCTTCAATA 183749
|||||||| ||||| || || ||||| |||| || || ||||| || || ||||| ||
Sbjct 362055 TCACCACCCAAATGAGTGTCACCAGCGGTAGACTTGACCTCAAAAATGCCATCTTCGATG 361996
Query 183750 TTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790
| ||||| || |||||||| ||||||||||| | |||||
Sbjct 361995 GTCAAAATAGACACATCAAAAGTACCACCACCAAGGTCAAA 361955
Score = 84.2 bits (92), Expect = 7e-11
Identities = 189/279 (68%), Gaps = 4/279 (1%)
Strand=Plus/Minus
Query 183262 CTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAA-TTCTTTGCCATTA 183320
|||| ||||| ||||||||||| || || || || | | ||| |||||| ||||||
Sbjct 362543 CTGCTCCATAGGCAACAGCTTCGTCGGGATTGAT-GCTTTTGTTAAGTTCTTTCCCATTA 362485
Query 183321 AAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCACCGACTAATACT 183380
||||| ||| | || | |||| ||| ||||| | ||| ||||| || || || ||
Sbjct 362484 AAAAAATCTTGCAACAACTTCTGAACTTTAGGAATGCGAGTAGAACCGCCCACCAAAACA 362425
Query 183381 ACTTCATCGAT-ATTACTTTTACTAATTTGTGAATCTTTTAAAACTTTTTCAACAGGGTC 183439
||||||| || | | |||| ||||||| | ||| | | ||||||| || || ||
Sbjct 362424 ACTTCATGAATCACTGCTTTGTCTAATTT-CGCATCACGAAGAGCTTTTTCTACTGGTTC 362366
Query 183440 CATAGTTTTTCTAAATAAATCTATACATAACTCTTCTAATCTTGCTCTAGTTAAAGATGa 183499
|| ||| | || || || | |||||||| || | ||||| || | || |
Sbjct 362365 CAAAGTAGAACGGAACAAGTCAGCATTCAACTCTTCGAAGCGAGCTCTTGTAATAGTGGT 362306
Query 183500 aaaaaaGTCAATACCATTATATAAGGAATCAATTTCAAT 183538
| || ||||| || | || | | ||||||||||||
Sbjct 362305 GTAGAAATCAATGCCTTCGTAGAGGCTATCAATTTCAAT 362267
>seq252
Length=132080
Score = 156 bits (172), Expect = 1e-32
Identities = 119/141 (84%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| |
Sbjct 8740 CCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTACTT 8799
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| ||||||| ||||||||| || ||||| | ||| | ||| ||||| |||| |
Sbjct 8800 TTTACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 8859
Query 140718 GTTTTTACAAAAATCTGCATT 140738
||||| |||||||||||||||
Sbjct 8860 GTTTTCACAAAAATCTGCATT 8880
Score = 145 bits (160), Expect = 2e-29
Identities = 118/143 (83%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| |||||||| || | |||||||||||||| ||||| ||||| ||||| |||||||||
Sbjct 9024 TTACCAGCAAATATCAATCGTTGCTGATCAGGTGGAATGCCTTCCTTATCTTGAATTTTA 9083
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
||| ||||| ||||||| ||| ||||| || ||||| | ||| | ||| ||||| |||
Sbjct 9084 CTTTTCACATTTTCAATCGTATCTGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 9143
Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737
| |||||| ||||||||||||||
Sbjct 9144 AATGTTTTCACAAAAATCTGCAT 9166
Score = 136 bits (150), Expect = 1e-26
Identities = 116/143 (81%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| || |||||||||| | |||||||||||||||||| ||||| |||||||||||||||
Sbjct 9706 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 9765
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
||| ||||| || || | || |||||||||||||| ||||| | || ||||| ||
Sbjct 9766 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 9825
Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737
||||| || || || ||||||||
Sbjct 9826 AGTGTCTTCACGAATATCTGCAT 9848
>seq867
Length=98256
Score = 152 bits (168), Expect = 2e-31
Identities = 327/485 (67%), Gaps = 8/485 (2%)
Strand=Plus/Minus
Query 349233 GTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAA 349292
|||||| |||| | |||| |||||| ||||| ||||| |||||||| || || |||
Sbjct 53865 GTGTTGGGGTTTTCAAGAATGGTCGTGTTGAAATTATTGCTAATGATCAGGGCAATCGAA 53806
Query 349293 CAACGCCATCATACGTTGCATTTACC---GAAACTGAGCGTATGATTGGTGATTCTGCAA 349349
|| || || || || || ||||| ||| |||||| |||| || || | || |
Sbjct 53805 TCACCCCGTCGTATGTAGCTTTTACGCCGGAAGGGGAGCGTCTGATCGGCGACGCCGCGA 53746
Query 349350 AAAATCAAGCTG-CTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGT 349408
||||||| | || | | ||||| | |||||||| || ||||| ||||| | | |||
Sbjct 53745 AAAATCA-GTTGACCACCAATCCTGAGAATACGGTATTCGATGCAAAGCGTATGGTCGGT 53687
Query 349409 AGAAGTTTTTCTGACAAATCTACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTT 349468
|| | || || || | ||| | |||| ||| | || ||| | || |||
Sbjct 53686 CGAGAATGGTCGGATAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCATTTGCGGTGGTT 53627
Query 349469 CCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTT 349528
|||| | ||||| | || || || ||| |||||| | ||| ||
Sbjct 53626 GAAAAATCGAGC---AAACCGAACGTTCAGCTTACTGTTAACGGTGAAAAGAAATTGTTC 53570
Query 349529 TTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588
||||||||||||||| | |||||||| | |||||||| |||||||| || || |||
Sbjct 53569 ACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAGGCTTAT 53510
Query 349589 TTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAG 349648
|| || || ||| | |||| || | || || ||||| ||||| || ||||| ||
Sbjct 53509 TTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCAGCTTATTTCAACGATGCACAA 53450
Query 349649 CGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAAT 349708
||| || || |||||||| || | |||||| || | |||||| | |||| || ||
Sbjct 53449 CGTCAAGCTACCAAAGATGCAGGTACCATTGCTGGTCTTAATGTTGTTCGAATCATCAAC 53390
Query 349709 GAACC 349713
|||||
Sbjct 53389 GAACC 53385
>seq3275
Length=16498
Score = 138 bits (152), Expect = 3e-27
Identities = 117/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| |||||||| || |||||||| ||||| || |||||||| ||||||||||||||||||
Sbjct 6937 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 6878
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
| || ||||| ||||| | ||||| ||||| ||||| || |||| || || || ||
Sbjct 6877 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 6818
Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738
|| ||||| ||||| |||||||||
Sbjct 6817 AGAGTTTTCACAAATATCTGCATT 6794
Score = 129 bits (142), Expect = 2e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || | |||||| ||||| || ||||||||||| |||||||| ||||| ||
Sbjct 7900 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 7841
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||| | |||||||||||| ||||| | || | ||| ||||| || ||
Sbjct 7840 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 7781
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || || ||||| ||||||
Sbjct 7780 GTCTTAACGAAAATTTGCATT 7760
Score = 129 bits (142), Expect = 2e-24
Identities = 115/144 (80%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| |||||||| || | |||||| ||||| || ||||||||||| |||||||| |||||
Sbjct 8183 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 8124
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
|||||||||| || || | |||||||||||| ||||| | || | || || |||||
Sbjct 8123 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 8064
Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738
|| || || |||||||| ||||||
Sbjct 8063 AGAGTCTTAACAAAAATTTGCATT 8040
Score = 129 bits (142), Expect = 2e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || | |||||||||||| || |||||||| ||||||||||| ||||| ||
Sbjct 8462 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 8403
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| || || | |||||||||||| ||||| | || | || || ||||| ||
Sbjct 8402 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 8343
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || || ||||| ||||||
Sbjct 8342 GTCTTAACGAAAATTTGCATT 8322
Score = 118 bits (130), Expect = 3e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || || || || ||||| || || || |||||||| || ||||| || |
Sbjct 7266 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 7207
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| ||||| | ||| || || |||||||||||||||| || ||||| || |
Sbjct 7206 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 7147
Query 140718 GTTTTTACAAAAATCTGCAT 140737
||||| ||||| ||||||||
Sbjct 7146 GTTTTCACAAATATCTGCAT 7127
>seq3469
Length=14404
Score = 134 bits (148), Expect = 4e-26
Identities = 116/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| |||||||| || | |||||||||||| || ||||||||||| |||||||| |||||
Sbjct 6269 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 6328
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
|||||||||| || || | |||||||||||| ||||| | || | || || |||||
Sbjct 6329 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 6388
Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738
|| || || |||||||| ||||||
Sbjct 6389 AGAGTCTTAACAAAAATTTGCATT 6412
Score = 134 bits (148), Expect = 4e-26
Identities = 116/144 (81%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654
|| |||||||| || |||||||| ||||| || |||||||| ||||||||||||||||||
Sbjct 7515 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 7574
Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714
| || ||||| |||| | || || ||||| ||||| || |||| || || |||||
Sbjct 7575 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 7634
Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738
|| ||||| ||||| |||||||||
Sbjct 7635 AGAGTTTTGACAAATATCTGCATT 7658
Score = 129 bits (142), Expect = 2e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || | |||||||||||| || |||||||| ||||||||||| ||||| ||
Sbjct 5989 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 6048
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| || || | |||||||||||| ||||| | || | || || ||||| ||
Sbjct 6049 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 6108
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || || ||||| ||||||
Sbjct 6109 GTCTTAACGAAAATTTGCATT 6129
Score = 129 bits (142), Expect = 2e-24
Identities = 113/141 (80%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || | |||||| ||||| || ||||||||||| |||||||| ||||| ||
Sbjct 6552 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 6611
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| ||||| | |||||||||||| ||||| | || | ||| ||||| || ||
Sbjct 6612 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 6671
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || || ||||| ||||||
Sbjct 6672 GTCTTAACGAAAATTTGCATT 6692
Score = 118 bits (130), Expect = 3e-21
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || || || || ||||| || || || |||||||| || ||||| || |
Sbjct 7186 CCAGCAAAAATAAGCCGCTGTTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 7245
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|||||||| ||||| | ||| || || |||||||||||||||| || ||||| || |
Sbjct 7246 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 7305
Query 140718 GTTTTTACAAAAATCTGCAT 140737
||||| ||||| ||||||||
Sbjct 7306 GTTTTCACAAATATCTGCAT 7325
>seq273
Length=128786
Score = 120 bits (132), Expect = 9e-22
Identities = 111/141 (79%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657
|||||||| || ||||| || ||||| ||||||||||| || ||||| ||||| || ||
Sbjct 111631 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 111572
Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717
|| ||||| |||| | |||||||||||| ||||| | || | || || || |||||
Sbjct 111571 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTTTTCCCAGTTAGG 111512
Query 140718 GTTTTTACAAAAATCTGCATT 140738
|| || |||||||| ||||||
Sbjct 111511 GTCTTAACAAAAATTTGCATT 111491
>seq316
Length=123628
Score = 98.7 bits (108), Expect = 3e-15
Identities = 75/89 (84%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607
|||| |||||||| ||||| || || || || ||||||||||| |||||||||||||| |
Sbjct 46548 CTTTCTGAATATTGTAATCGGACAAAGTACGTCCATCTTCAAGCTGTTTTCCAGCAAAAA 46607
Query 140608 TTAGACGTTGCTGATCAGGAGGAATTCCT 140636
| || || ||||||||||| ||||| |||
Sbjct 46608 TCAGTCGCTGCTGATCAGGTGGAATCCCT 46636
Score = 89.7 bits (98), Expect = 2e-12
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693
||||| || |||||||||||||| || ||||| | ||| | |||||| || || |||||
Sbjct 46683 CCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTGAATTGTATCAGAAGGCTCCACTTCC 46742
Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737
| || | |||||||| ||||| ||||| ||||| || |||||
Sbjct 46743 AAAGTGATGGTCTTTCCTGTTAGGGTTTTCACAAATATTTGCAT 46786
>seq4000
Length=192761
Score = 89.7 bits (98), Expect = 2e-12
Identities = 111/152 (73%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 266973 ATCGGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCCT 267032
|| || || |||||| | ||||| ||||| || || || |||||||| | ||| || |
Sbjct 116279 ATTGGTGACAAATTTGCCAGTCGTCACGGTCAGAAGGGCACCATTGGGATGATATATCGT 116338
Query 267033 GAAGAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCAT 267092
|||| | |||||||| | || || || | || || ||||| || ||||| ||
Sbjct 116339 CAAGAGGACATGCCATTCACGTGCGAAGGCATCACGCCGGACATTATAATCAATCCACAC 116398
Query 267093 GCTATTCCTAGTCGTATGACAATTGGTCAATT 267124
|| ||||||||||| ||||| |||||||| ||
Sbjct 116399 GCAATTCCTAGTCGAATGACCATTGGTCATTT 116430
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1515168142722729
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |