Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1313 91.5 2e-13 seq203 89.7 6e-13 >seq1313 Length=81678 Score = 91.5 bits (100), Expect = 2e-13 Identities = 124/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 |||| |||||||||||| || || || |||||||||||||| ||||| | ||||| Sbjct 10657 GTTCTCAAATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGAT 10598 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | || || || | |||| | | ||| || || | ||||||||| ||||| ||| Sbjct 10597 GTCAATTTAGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATG 10538 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362 | || || | || || |||||||| ||||| | ||||| | ||| ||||| Sbjct 10537 AATGCTCCCCTTTCAGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCA 10485 >seq203 Length=339139 Score = 89.7 bits (98), Expect = 6e-13 Identities = 196/289 (68%), Gaps = 5/289 (2%) Strand=Plus/Plus Query 59827 TCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGG 59886 |||| ||||| | |||| ||| ||||||| | | || ||||||| ||| | Sbjct 23411 TCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCGTGATCCGGTGGAGCGTG 23470 Query 59887 CTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCC 59945 | ||||||| || || ||||| | || || || || |||||||||| ||||| Sbjct 23471 ATTTTCTGTTCAACGCGATCGAGACCATTCCGTGC-GTGAAGAAAAAAGCAGACTGGGCT 23529 Query 59946 ATGCAGTGGATGAGT--CCTGGAG-CATCATTTGCACAACGTCTCATAGCTTTTGCATGC 60002 ||| ||||| || || || | ||||| ||||| | | || || ||| Sbjct 23530 TTGCGCTGGATCGGTGACCGTCAGTCGCCATTTTGCGAACGTTTGGTCGCGTTCGCAGCT 23589 Query 60003 GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGC 60062 || ||||| || ||||| || ||| ||| | ||||||||| | |||||||| ||| Sbjct 23590 GTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGCGGC 23649 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 || ||||| || ||| ||| |||||||||||| || || ||||||| Sbjct 23650 CTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTCGTGACGAGG 23698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548494336303920