Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq3469 118 1e-21
seq3275 118 1e-21
seq273 109 6e-19
seq203 107 2e-18
seq252 93.3 5e-14
seq316 82.4 9e-11
>seq3469
Length=14404
Score = 118 bits (130), Expect = 1e-21
Identities = 115/148 (78%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || |||||||| || || ||||| || || |||||||| || || || |
Sbjct 7658 AATGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCTC 7599
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||| |||| |||||| |||||||||||| || ||||||||||| || || ||
Sbjct 7598 AGACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 7539
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
|| ||||| ||||||||||||||| ||
Sbjct 7538 ACAACGTCTGATTTTTGCTGGTAAGTAA 7511
Score = 109 bits (120), Expect = 6e-19
Identities = 113/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| ||||| ||||| ||||||||||| || || || | || || || ||
Sbjct 6412 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 6353
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | ||| | || | ||||| ||||| ||||| |||||||| || || ||
Sbjct 6352 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 6293
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
||| ||| | ||||||||||||||| ||
Sbjct 6292 GCAACGTTTGATTTTTGCTGGTAAGTAA 6265
Score = 107 bits (118), Expect = 2e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| ||||| || || || || ||| | || || || ||
Sbjct 6692 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 6633
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| |||| |||| |||| | ||||| ||||| ||||| |||||||| || || ||
Sbjct 6632 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 6573
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551
|| ||| | |||||||||||| ||||
Sbjct 6572 ACAACGTTTGATTTTTGCTGGTGAGCA 6546
Score = 105 bits (116), Expect = 8e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| ||||||||||| || || || | || || || ||
Sbjct 6129 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 6070
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | ||| | || | ||||| ||||| || ||||||||||| ||||| ||
Sbjct 6069 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCA 6010
Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547
||| ||| | |||||||||||||
Sbjct 6009 GCAACGTTTGATTTTTGCTGGTA 5987
Score = 91.5 bits (100), Expect = 2e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| || ||| | || || || || ||||| ||||| |||||| |
Sbjct 7325 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 7266
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| |||| | || || ||||| ||||| || || || || ||||| ||
Sbjct 7265 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 7206
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550
||||| || ||||||||||||| ||
Sbjct 7205 CAGCGGCTTATTTTTGCTGGTATGC 7181
>seq3275
Length=16498
Score = 118 bits (130), Expect = 1e-21
Identities = 115/148 (78%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || ||||| || || || || || || || |||||||| || || || |
Sbjct 6794 AATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 6853
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | |||| |||| |||||| |||||||||||| || ||||||||||| || || ||
Sbjct 6854 TGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 6913
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
|| ||||| ||||||||||||||| ||
Sbjct 6914 ACAACGTCTGATTTTTGCTGGTAAGTAA 6941
Score = 107 bits (118), Expect = 2e-18
Identities = 112/147 (76%), Gaps = 0/147 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| ||||| || || || || ||| | || || || ||
Sbjct 7760 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 7819
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| |||| |||| |||| | ||||| ||||| ||||| |||||||| || || ||
Sbjct 7820 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 7879
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCA 27551
|| ||| | |||||||||||| ||||
Sbjct 7880 ACAACGTTTGATTTTTGCTGGTGAGCA 7906
Score = 105 bits (116), Expect = 8e-18
Identities = 112/148 (76%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| ||||| ||||| ||||||||||| || || || | || || || ||
Sbjct 8040 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 8099
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | ||| | || | ||||| ||||| ||||| |||||||| || || ||
Sbjct 8100 TGATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCA 8159
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAA 27552
|| ||| | ||||||||||||||| ||
Sbjct 8160 ACAACGTTTGATTTTTGCTGGTAAGTAA 8187
Score = 105 bits (116), Expect = 8e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| || || ||||| ||||||||||| || || || | || || || ||
Sbjct 8322 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 8381
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| || | ||| | || | ||||| ||||| || ||||||||||| ||||| ||
Sbjct 8382 TGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCA 8441
Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547
||| ||| | |||||||||||||
Sbjct 8442 GCAACGTTTGATTTTTGCTGGTA 8464
Score = 91.5 bits (100), Expect = 2e-13
Identities = 107/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || ||||| || ||| | || || || || ||||| ||||| |||||| |
Sbjct 7127 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 7186
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| |||| |||| | || || ||||| ||||| || || || || ||||| ||
Sbjct 7187 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 7246
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGC 27550
||||| || ||||||||||||| ||
Sbjct 7247 CAGCGGCTTATTTTTGCTGGTATGC 7271
>seq273
Length=128786
Score = 109 bits (120), Expect = 6e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
||||||||| ||||| ||||| || || || || || || || | || || || ||
Sbjct 111491 AATGCAAATTTTTGTTAAGACCCTAACTGGGAAAACCATCACGTTGGAAGTGGAACCATC 111550
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||||| ||| ||| |||| | || ||||| || |||||||||||||||||||| ||
Sbjct 111551 TGATACTGTTGAGAATGTGAAAGGGAAGATTCAAGATAAGGAGGGAATTCCTCCAGATCA 111610
Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547
|||||||| |||||||||||||
Sbjct 111611 ACAGCGTCTGATTTTTGCTGGTA 111633
>seq203
Length=339139
Score = 107 bits (118), Expect = 2e-18
Identities = 185/268 (69%), Gaps = 3/268 (1%)
Strand=Plus/Plus
Query 64582 CTCATGATTGACAAGTTTGTTCGGGATCCTGTCGAGAAGGATGGACTGTTCAGGGCTATA 64641
||| |||| |||| | | || ||||| || ||| ||| ||||||| || ||
Sbjct 23431 CTCTTGATCGACACCTACATCCGTGATCCGGTGGAGCGTGATTTTCTGTTCAACGCGATC 23490
Query 64642 GAGACTGTACCCGCTGTTACTAAAAAGGCTGAATGGGCCATCCGGTGGATGAAT---CGT 64698
||||| | || || | ||||| || || ||||| | || ||||| | |||
Sbjct 23491 GAGACCATTCCGTGCGTGAAGAAAAAAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGT 23550
Query 64699 GGGTCGTCGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCT 64758
|||| | ||| | | ||| | | || || || ||| ||||| |||||||||||
Sbjct 23551 CAGTCGCCATTTTGCGAACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCC 23610
Query 64759 GGGTCATTCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTT 64818
|| ||| || ||||||||| | |||||||| ||||||||||| ||| || ||||
Sbjct 23611 GGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTC 23670
Query 64819 TCGAACGAGCTGATCTCTCGGGACGAGG 64846
||||||||||||||||| |||||||
Sbjct 23671 AGCAACGAGCTGATCTCTCGTGACGAGG 23698
>seq252
Length=132080
Score = 93.3 bits (102), Expect = 5e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462
|| ||||| || || || ||||| ||||| || || ||||| || || || ||||| ||
Sbjct 9851 ATTATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCA 9792
Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522
|| | ||| | |||| | || |||||||||||| ||||| || |||||||| ||
Sbjct 9791 TCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGAT 9732
Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAA 27548
||||| | |||| ||||| |||||
Sbjct 9731 CAGCAAAGATTAATCTTTGCAGGTAA 9706
>seq316
Length=123628
Score = 82.4 bits (90), Expect = 9e-11
Identities = 89/117 (76%), Gaps = 1/117 (1%)
Strand=Plus/Minus
Query 27394 AATATTACTATA-ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGA 27452
|||||| | || |||||||| ||||| || || || || || ||||| || ||| | ||
Sbjct 46799 AATATTTATTTAGATGCAAATATTTGTGAAAACCCTAACAGGAAAGACCATCACTTTGGA 46740
Query 27453 GGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|| ||| | ||||| ||| ||| ||||||||||||||||||||||||| ||
Sbjct 46739 AGTGGAGCCTTCTGATACAATTCAGAATGTGAAGGCTAAAATTCAGGACAAGGAAGG 46683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570278726386160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |