Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_028636.1
Length=135952
Score E
Sequences producing significant alignments: (Bits) Value
seq3469 114 1e-20
seq3275 114 1e-20
seq252 82.4 7e-11
>seq3469
Length=14404
Score = 114 bits (126), Expect = 1e-20
Identities = 101/126 (80%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| |||||||||||||| || | |||||||| ||||||||||| ||
Sbjct 7657 ATGCAGATATTTGTCAAAACTCTGACCGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 7598
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | |||| | || || |||||||| || ||||| || || ||||||||||||
Sbjct 7597 GACACAGTTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 7538
Query 27108 CAGCGT 27113
|| |||
Sbjct 7537 CAACGT 7532
Score = 113 bits (124), Expect = 4e-20
Identities = 100/125 (80%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||| |||| || || | ||||| |||||||| || |||||
Sbjct 7325 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 7266
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| || |||||||||||||||||||| ||||| ||||||
Sbjct 7265 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 7206
Query 27108 CAGCG 27112
|||||
Sbjct 7205 CAGCG 7201
>seq3275
Length=16498
Score = 114 bits (126), Expect = 1e-20
Identities = 101/126 (80%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||||||||| || || | |||||||| ||||||||||| ||
Sbjct 6795 ATGCAGATATTTGTGAAAACTCTGACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCT 6854
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
||| | ||||| | || || |||||||| || ||||| || || ||||||||||||
Sbjct 6855 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 6914
Query 27108 CAGCGT 27113
|| |||
Sbjct 6915 CAACGT 6920
Score = 113 bits (124), Expect = 4e-20
Identities = 100/125 (80%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||||||||| ||||| |||| || || | ||||| |||||||| || |||||
Sbjct 7127 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 7186
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| | ||||| | || ||| || |||||||||||||||||||| ||||| ||||||
Sbjct 7187 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 7246
Query 27108 CAGCG 27112
|||||
Sbjct 7247 CAGCG 7251
>seq252
Length=132080
Score = 82.4 bits (90), Expect = 7e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| | || || || | || || | ||||| || || ||
Sbjct 8879 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 8820
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| ||||||| | || ||| ||||||||||| || |||||||| ||||| |||||
Sbjct 8819 GATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 8760
Query 27108 CAGCGTTTAATAT 27120
|| || || ||||
Sbjct 8759 CAACGATTGATAT 8747
Score = 82.4 bits (90), Expect = 7e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047
|||||||| ||||| ||||| | || || || | || || | ||||| || || ||
Sbjct 9166 ATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCA 9107
Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107
|| ||||||| | || ||| ||||||||||| || |||||||| ||||| |||||
Sbjct 9106 GATACGATTGAAAATGTGAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCAG 9047
Query 27108 CAGCGTTTAATAT 27120
|| || || ||||
Sbjct 9046 CAACGATTGATAT 9034
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 434894245719360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |