Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq3275 89.7 4e-13 seq3469 86.0 4e-12 seq252 84.2 2e-11 >seq3275 Length=16498 Score = 89.7 bits (98), Expect = 4e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 27928 GGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACT 27987 || ||||| ||||| |||| ||| | ||||||||||| ||||| || ||||||||||| Sbjct 7037 GGCAAACAGTTGGAAGACGGACGTACTTTGTCCGATTATAACATTCAGAAAGAGAGCACG 7096 Query 27988 TTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || ||||||||||||||||| || || Sbjct 7097 CTTCACTTGGTTTTGCGTTTGCGCGGTGG 7125 >seq3469 Length=14404 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 27922 TTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAG 27981 ||| | || ||||| ||||| |||| ||| | ||||||||||| || || || |||||| Sbjct 7421 TTTTCAGGCAAACAGTTGGAAGACGGACGTACTTTGTCCGATTATAATATTCAGAAAGAG 7362 Query 27982 AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| | || ||||||||||||||||| || || Sbjct 7361 AGCACGCTTCACTTGGTTTTGCGTTTGCGCGGTGG 7327 >seq252 Length=132080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 27928 GGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACT 27987 || |||||| |||| || | || | || ||||| ||||| ||||| ||||| |||||| Sbjct 8969 GGGAAACAACTGGAAGATGGTCGTACGTTATCCGACTACAATATCCAGAAAGAAAGCACT 8910 Query 27988 TTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| ||||||| |||||||| Sbjct 8909 TTGCATTTGGTGCTGCGTTTACGTGGCGG 8881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355843130384661