Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq3469 86.0 4e-12 seq3275 86.0 4e-12 >seq3469 Length=14404 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || ||||||||||| || || |||||||| | | Sbjct 7325 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 7266 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| || ||| ||||||||||| | || ||||||||| Sbjct 7265 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 7206 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| | || ||||| || Sbjct 7205 CAGCGGCTTATTTTTGCTGG 7186 >seq3275 Length=16498 Score = 86.0 bits (94), Expect = 4e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| | || ||||||||||| || || |||||||| | | Sbjct 7127 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 7186 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||||| ||||| || ||| ||||||||||| | || ||||||||| Sbjct 7187 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 7246 Query 23731 CAGCGTTTAATATTTGCCGG 23750 ||||| | || ||||| || Sbjct 7247 CAGCGGCTTATTTTTGCTGG 7266 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337991297097044