Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq203 118 9e-22 >seq203 Length=339139 Score = 118 bits (130), Expect = 9e-22 Identities = 238/349 (68%), Gaps = 12/349 (3%) Strand=Plus/Minus Query 4584 ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATA 4643 ||||| ||||| ||||| || |||||||| | || | |||||| | ||| || || Sbjct 23684 ATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCTTTTTCAACCAGAAAATT 23625 Query 4644 GCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGAC 4703 | || || || |||||||| |||||||| || || || ||||| || || || Sbjct 23624 GACGCGAAGCTGCCGGAAAAGAAAATGCCTTCAACAGCTGCGAACGCGACCAAACGTTCG 23565 Query 4704 CCGAA---CGAGCTGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTA 4760 | || ||| ||| | ||| ||||| || ||||||| ||||||||||| Sbjct 23564 CAAAATGGCGA-CTGACG--GTCACCGATCCAGCGCAAAGCCCAGTCTGCTTTTTTCTTC 23508 Query 4761 ACGCACGGAATTGTGTATATAGCGTTAAA---TAATTTACTTTTTTCAAATGGGTCTTGA 4817 ||||||||||| || | || ||||| || || | || || | || || | Sbjct 23507 ACGCACGGAATGGTCTCGATCGCGTTGAACAGAAAATCAC---GCTCCACCGGATCACGG 23451 Query 4818 ATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGA 4877 || || ||||| || | ||||| |||||||| ||||| | ||||||||| ||||| || Sbjct 23450 ATGTAGGTGTCGATCAAGAGGCTGTACATTTCGGAATGGACATTTTCTATGGCAATTTGG 23391 Query 4878 AATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 || || || || | | || || |||||||||| ||| | |||||| Sbjct 23390 AAGCCATAGAAAAAACGTGCCTCGGTTACTTGAATTTCTTGCGAAAATC 23342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427026475664519