Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24] 4,443 sequences; 47,933,238 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq1313 143 4e-29 >seq1313 Length=81678 Score = 143 bits (158), Expect = 4e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427 || |||| ||||| ||||| | | ||| || || || | | ||||||||| ||| Sbjct 10696 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 10637 Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487 ||||| |||||| |||| |||||||||||||| ||| | ||| | |||| |||| Sbjct 10636 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 10577 Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547 |||||||| |||||||||| |||||| ||| || ||||| ||||| || ||||| ||| Sbjct 10576 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 10517 Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 75589 || | ||| | | ||||| | ||||||||||| || ||| Sbjct 10516 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTG 10475 Score = 123 bits (136), Expect = 4e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76511 TATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACAC 76570 ||||| |||||| ||||| ||||| | ||| |||| ||||||||||||| || ||| Sbjct 9205 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 9146 Query 76571 ATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGA 76630 |||| |||||| || || || | | || || ||||| || |||||||||||||| || Sbjct 9145 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 9086 Query 76631 GCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGG 76690 ||| ||| | |||||||| || |||||| ||||| |||||||| || || Sbjct 9085 GCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 9026 Query 76691 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731 || || | || || | ||||| ||||| | ||| | ||| Sbjct 9025 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCGC 8985 Score = 114 bits (126), Expect = 2e-20 Identities = 196/280 (70%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 75879 ATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGT 75938 ||| ||||||||| | ||| | || ||||| ||| | || ||||| ||||| || | Sbjct 10041 ATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCT 9982 Query 75939 TGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAAC 75998 | ||||| ||| || | ||| || ||||| | || || || || | ||||||| Sbjct 9981 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAAC 9922 Query 75999 TCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAG--ATCTTGCG- 76055 | ||||||||| | ||||| || ||||| ||||| |||||||| | |||| || Sbjct 9921 TGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCTT 9862 Query 76056 CTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTC 76115 |||| || | |||| ||||| | | | |||||| ||||| || | ||| || || | Sbjct 9861 CTTCG-GATT--CAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGTACAC 9805 Query 76116 CAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155 |||||||||| |||| ||| | || || || |||| || Sbjct 9804 CAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGC 9765 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 |||||||||||| || | || | ||||| || | ||| || || | ||| || || Sbjct 10271 TTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTACTGA 10212 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 ||||||||| ||||||||||| || || || ||||||||||| || |||| ||| || Sbjct 10211 TTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAACGA 10152 Query 75841 ATTTCTGAGACCAT 75854 |||||| ||||||| Sbjct 10151 ATTTCTCAGACCAT 10138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712894805405760