Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq1313 143 4e-29
>seq1313
Length=81678
Score = 143 bits (158), Expect = 4e-29
Identities = 165/222 (74%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427
|| |||| ||||| ||||| | | ||| || || || | | ||||||||| |||
Sbjct 10696 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 10637
Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487
||||| |||||| |||| |||||||||||||| ||| | ||| | |||| ||||
Sbjct 10636 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 10577
Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547
|||||||| |||||||||| |||||| ||| || ||||| ||||| || ||||| |||
Sbjct 10576 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 10517
Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 75589
|| | ||| | | ||||| | ||||||||||| || |||
Sbjct 10516 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTG 10475
Score = 123 bits (136), Expect = 4e-23
Identities = 160/221 (72%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 76511 TATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACAC 76570
||||| |||||| ||||| ||||| | ||| |||| ||||||||||||| || |||
Sbjct 9205 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 9146
Query 76571 ATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGA 76630
|||| |||||| || || || | | || || ||||| || |||||||||||||| ||
Sbjct 9145 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 9086
Query 76631 GCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGG 76690
||| ||| | |||||||| || |||||| ||||| |||||||| || ||
Sbjct 9085 GCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 9026
Query 76691 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGC 76731
|| || | || || | ||||| ||||| | ||| | |||
Sbjct 9025 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCGC 8985
Score = 114 bits (126), Expect = 2e-20
Identities = 196/280 (70%), Gaps = 6/280 (2%)
Strand=Plus/Minus
Query 75879 ATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGT 75938
||| ||||||||| | ||| | || ||||| ||| | || ||||| ||||| || |
Sbjct 10041 ATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCCT 9982
Query 75939 TGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAAC 75998
| ||||| ||| || | ||| || ||||| | || || || || | |||||||
Sbjct 9981 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAAC 9922
Query 75999 TCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAG--ATCTTGCG- 76055
| ||||||||| | ||||| || ||||| ||||| |||||||| | |||| ||
Sbjct 9921 TGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCTAGCTT 9862
Query 76056 CTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTC 76115
|||| || | |||| ||||| | | | |||||| ||||| || | ||| || || |
Sbjct 9861 CTTCG-GATT--CAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGTACAC 9805
Query 76116 CAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155
|||||||||| |||| ||| | || || || |||| ||
Sbjct 9804 CAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGC 9765
Score = 98.7 bits (108), Expect = 1e-15
Identities = 102/134 (76%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780
|||||||||||| || | || | ||||| || | ||| || || | ||| || ||
Sbjct 10271 TTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTACTGA 10212
Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840
||||||||| ||||||||||| || || || ||||||||||| || |||| ||| ||
Sbjct 10211 TTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAACGA 10152
Query 75841 ATTTCTGAGACCAT 75854
|||||| |||||||
Sbjct 10151 ATTTCTCAGACCAT 10138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712894805405760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |