Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nativa_20[genbank_20GCA_5F001447565.1_202015-11-24]
4,443 sequences; 47,933,238 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq3275 95.1 3e-14
seq3469 93.3 9e-14
seq252 86.0 1e-11
seq1834 84.2 5e-11
>seq3275
Length=16498
Score = 95.1 bits (104), Expect = 3e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||| ||||||||| || ||||| ||||| || || || || ||
Sbjct 6937 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 6878
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
| || || | || || ||||| || | ||| ||||| ||||| || || || || |||
Sbjct 6877 CCCTTCACATTTTCAATTGTGTCAGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 6818
Query 283077 AAAGTCTTAACGAATATCTGCATTTTC 283103
| ||| || || |||||||||||||||
Sbjct 6817 AGAGTTTTCACAAATATCTGCATTTTC 6791
Score = 93.3 bits (102), Expect = 9e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||||||||||||| || ||||| || ||||| || || || ||
Sbjct 8183 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 8124
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
||||||| | || || || || || | ||| ||||| | |||||||| || || ||
Sbjct 8123 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 8064
Query 283077 AAAGTCTTAACGAATATCTGCATT 283100
| ||||||||| || || ||||||
Sbjct 8063 AGAGTCTTAACAAAAATTTGCATT 8040
Score = 93.3 bits (102), Expect = 9e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| ||||||||||| || || ||||| ||||| || || || || || ||
Sbjct 8462 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 8403
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
||||| | || || || || || | ||| ||||| | |||||||| || || || | |
Sbjct 8402 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 8343
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||||||||| || ||||||
Sbjct 8342 GTCTTAACGAAAATTTGCATT 8322
Score = 84.2 bits (92), Expect = 5e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| |||||||||||||| || ||||| || ||||| || || || || ||
Sbjct 7900 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 7841
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| || | || || || || || | ||| ||||| | ||| || || || || || |
Sbjct 7840 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 7781
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||||||||| || ||||||
Sbjct 7780 GTCTTAACGAAAATTTGCATT 7760
>seq3469
Length=14404
Score = 93.3 bits (102), Expect = 9e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| ||||||||||| || || ||||| ||||| || || || || || ||
Sbjct 5989 CCAGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 6048
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
||||| | || || || || || | ||| ||||| | |||||||| || || || | |
Sbjct 6049 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCTAAGGTGATCGTTTTGCCGGTAAGA 6108
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||||||||| || ||||||
Sbjct 6109 GTCTTAACGAAAATTTGCATT 6129
Score = 89.7 bits (98), Expect = 1e-12
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| ||||||||||| || || ||||| || ||||| || || || ||
Sbjct 6269 TTACCAGCAAAAATCAAACGTTGCTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTC 6328
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
||||||| | || || || || || | ||| ||||| | |||||||| || || ||
Sbjct 6329 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 6388
Query 283077 AAAGTCTTAACGAATATCTGCATT 283100
| ||||||||| || || ||||||
Sbjct 6389 AGAGTCTTAACAAAAATTTGCATT 6412
Score = 86.0 bits (94), Expect = 1e-11
Identities = 106/145 (73%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || ||||| |||| ||||||||| || ||||| ||||| || || || || ||
Sbjct 7515 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 7574
Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076
| || || | || | ||||| || | ||| ||||| ||||| || || || || |||
Sbjct 7575 CCCTTCACATTTTCAACTGTGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCGGTC 7634
Query 283077 AAAGTCTTAACGAATATCTGCATTT 283101
| ||| || || |||||||||||||
Sbjct 7635 AGAGTTTTGACAAATATCTGCATTT 7659
Score = 84.2 bits (92), Expect = 5e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019
|| ||||| |||||||||||||| || ||||| || ||||| || || || || ||
Sbjct 6552 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 6611
Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079
|| || | || || || || || | ||| ||||| | ||| || || || || || |
Sbjct 6612 TTCACATTTTCAATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGG 6671
Query 283080 GTCTTAACGAATATCTGCATT 283100
||||||||||| || ||||||
Sbjct 6672 GTCTTAACGAAAATTTGCATT 6692
>seq252
Length=132080
Score = 86.0 bits (94), Expect = 1e-11
Identities = 107/144 (74%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016
|| || |||||||| || | ||| || ||| ||||| || ||||| || || || |||
Sbjct 9706 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 9764
Query 283017 GCTTTTA-CGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075
|||||| | | ||||| ||||| || | ||| ||||| || || || || || || ||
Sbjct 9765 ACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 9824
Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099
| ||||| ||||||||||||||
Sbjct 9825 AAGTGTCTTCACGAATATCTGCAT 9848
>seq1834
Length=61910
Score = 84.2 bits (92), Expect = 5e-11
Identities = 226/338 (67%), Gaps = 12/338 (4%)
Strand=Plus/Plus
Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839
|| |||||||| || ||||| || || |||| || | || | | ||||| |||
Sbjct 37508 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCAAATTGA 37567
Query 273840 CCC-TCGG--GCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTC 273896
|| |||| ||| || ||| ||||| ||||| || ||| ||| ||||||| |||
Sbjct 37568 CCAATCGGTAGCAATAT---GTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTT 37624
Query 273897 ACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGATATAA 273956
| || || | | || || |||||||||||||| || ||||| || | ||
Sbjct 37625 ATAATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAA 37684
Query 273957 CCACTGAACTGAGCAACCTTCACATCGCTCGTCAA--GTTTCGCTTGAATGCGGAATACA 274014
||| | |||||| || ||||| | ||||| | ||| |||||||| | |||
Sbjct 37685 CCAGCAAGCTGAGCGACTTTCACTT--CTCGTTTATCGTTGCGCTTGAAACACGTGAACA 37742
Query 274015 ACACCTTCCGCTGCGAGGGCTTGAACCCATCAACGACCGATGGAATACTGCGTTCCAAAT 274074
| || || || || ||||| || |||||||| | ||| ||||| || || || ||
Sbjct 37743 AAACTTTACGTTGTCCAGGCTTCAAGCCATCAACTATCGAAGGAATGCTACGCTCGTTAT 37802
Query 274075 -CATACCGAGAGAACAAAATCAGTTCCTTGTCAATGAA 274111
||| | ||||||||||| || ||||| |||||
Sbjct 37803 CCATGTTG-CTGAACAAAATCAACTCTTTGTCGATGAA 37839
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046679613389722
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |