Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq2680 116 3e-21
>seq2680
Length=639
Score = 116 bits (128), Expect = 3e-21
Identities = 153/212 (72%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023
||||||| ||| | ||||| ||||| || ||||| ||||| |||||||| || | |||
Sbjct 361 AGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGGCCATCC 302
Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083
|| ||||| || || ||| | ||||| ||||||||||| || | || ||||||||
Sbjct 301 TCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCC 242
Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143
||| || ||||| | ||| || || | |||| |||| ||| ||||||
Sbjct 241 TGGATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGGTC 182
Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| ||||| || || |||||||| || |||||
Sbjct 181 TTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150
Score = 89.7 bits (98), Expect = 4e-13
Identities = 138/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038
|| |||||||| || || || ||||| |||||||| | | ||||| ||||| |||||
Sbjct 574 GTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCCATCCTCGAGCTGCTTGCCG 515
Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098
||| | ||||| ||||||||||| || | || |||||||| ||||| |||
Sbjct 514 GCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTGGCCTTC 455
Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158
|| | | | | || || | |||| || | ||| |||||||| || || | ||
Sbjct 454 ACATTGTCAATGGTGTCTGAGCTCTCCACCTCAAGGGTGATGGTCTTCCCTGTAAGAGTC 395
Query 21159 TTGACAAATATTTGCAT 21175
|||||||| || |||||
Sbjct 394 TTGACAAAAATCTGCAT 378
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 422243920682804
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |