Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2603 188 7e-43 seq2680 93.3 4e-14 >seq2603 Length=690759 Score = 188 bits (208), Expect = 7e-43 Identities = 267/373 (72%), Gaps = 7/373 (2%) Strand=Plus/Minus Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862 ||| ||||| || | || || | || || ||||||| || | ||||| ||||| || Sbjct 457374 GGTGGAGCGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCA 457315 Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTC---ATCGACACGTACGT 116919 || ||||| || || || || || |||||||| | |||| |||||||| ||| | Sbjct 457314 AATTGCCATAGAAAATGTCCATTCCGAAATGTAC---AGCCTCTTGATCGACACCTACAT 457258 Query 116920 GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAA 116979 || | ||| |||| | |||| ||||| |||||||| || |||||||| || Sbjct 457257 CCGTGATCCGGTGGAGCGTGATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCGTGAA 457198 Query 116980 AGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCG 117039 | || || || ||||| |||||||||||| | | | || | | || |||| || Sbjct 457197 GAAAAAAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCAGTCGCCATTTTGCGAACG 457138 Query 117040 CCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATT 117099 |||| || ||||| || ||||| ||| | |||||||| ||||| ||||| | || || Sbjct 457137 TTTGGTCGCGTTCGCAGCTGTCGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTT 457078 Query 117100 TTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAG 117159 ||| | || || |||||||| |||||||| |||| |||||||||||||| ||||| | Sbjct 457077 CTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTCG 457018 Query 117160 GGACGAGGGTCTG 117172 ||||| |||||| Sbjct 457017 TGACGA-GGTCTG 457006 >seq2680 Length=639 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || || || ||||||||| | || || || | | Sbjct 378 ATGCAGATTTTTGTCAAGACTCTTACAGGGAAGACCATCACCCTTGAGGTGGAGAGCTCA 437 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || |||| ||||| ||||| || || | |||||| Sbjct 438 GACACCATTGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGGATTCCACCAGACCAG 497 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || ||||| ||||| || || | ||| ||||| |||||||| Sbjct 498 CAGAGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGGCGTACCCTGGCAGACTACAAT 557 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| | || || || || || Sbjct 558 ATCCAGAAGGAGTCTACCCTTCACCTTGT 586 Score = 91.5 bits (100), Expect = 2e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || || ||||||||| | || || || | | Sbjct 150 ATGCAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACCTTGGAGGTGGAGAGCTCA 209 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| ||||| | ||||| ||||| ||||| | |||||| Sbjct 210 GACACCATCGATAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATCCCACCAGACCAG 269 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || |||| || || || ||||| || || | || ||||| ||||||||| Sbjct 270 CAGAGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACCCTGGCAGACTACAAC 329 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 ||||||||||| |||| || ||| | ||| Sbjct 330 ATCCAGAAGGAATCCACCCTTCATTTGGTG 359 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833 || |||| ||||| ||||| |||||| ||||||| || || || |||| || || || Sbjct 6 AAGATTCAGGACAAGGAGGGAATCCCCCCGGACCAACAGCGTCTGATCTTTGCCGGAAAG 65 Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893 ||||| || || | |||||||| || ||||||||||||||||| |||| || ||| Sbjct 66 CAGCTTGAGGATGGCCGCACCCTGGCAGATTACAACATCCAGAAGGAATCCACCCTTCAT 125 Query 40894 CTAGTG 40899 | ||| Sbjct 126 TTGGTG 131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515200078927440