Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq2603 188 7e-43
seq2680 93.3 4e-14
>seq2603
Length=690759
Score = 188 bits (208), Expect = 7e-43
Identities = 267/373 (72%), Gaps = 7/373 (2%)
Strand=Plus/Minus
Query 116803 GGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCA 116862
||| ||||| || | || || | || || ||||||| || | ||||| ||||| ||
Sbjct 457374 GGTGGAGCGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCA 457315
Query 116863 GATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACCCTC---ATCGACACGTACGT 116919
|| ||||| || || || || || |||||||| | |||| |||||||| ||| |
Sbjct 457314 AATTGCCATAGAAAATGTCCATTCCGAAATGTAC---AGCCTCTTGATCGACACCTACAT 457258
Query 116920 GCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAA 116979
|| | ||| |||| | |||| ||||| |||||||| || |||||||| ||
Sbjct 457257 CCGTGATCCGGTGGAGCGTGATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCGTGAA 457198
Query 116980 AGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCG 117039
| || || || ||||| |||||||||||| | | | || | | || |||| ||
Sbjct 457197 GAAAAAAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCAGTCGCCATTTTGCGAACG 457138
Query 117040 CCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATT 117099
|||| || ||||| || ||||| ||| | |||||||| ||||| ||||| | || ||
Sbjct 457137 TTTGGTCGCGTTCGCAGCTGTCGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTT 457078
Query 117100 TTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAG 117159
||| | || || |||||||| |||||||| |||| |||||||||||||| ||||| |
Sbjct 457077 CTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTCG 457018
Query 117160 GGACGAGGGTCTG 117172
||||| ||||||
Sbjct 457017 TGACGA-GGTCTG 457006
>seq2680
Length=639
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || || || ||||||||| | || || || | |
Sbjct 378 ATGCAGATTTTTGTCAAGACTCTTACAGGGAAGACCATCACCCTTGAGGTGGAGAGCTCA 437
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| || |||| ||||| ||||| || || | ||||||
Sbjct 438 GACACCATTGACAATGTGAAGGCCAAGATTCAAGACAAGGAGGGGATTCCACCAGACCAG 497
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || |||| || ||||| ||||| || || | ||| ||||| ||||||||
Sbjct 498 CAGAGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGGCGTACCCTGGCAGACTACAAT 557
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898
|||||||||||| | || || || || ||
Sbjct 558 ATCCAGAAGGAGTCTACCCTTCACCTTGT 586
Score = 91.5 bits (100), Expect = 2e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || | || || || ||||||||| | || || || | |
Sbjct 150 ATGCAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACCTTGGAGGTGGAGAGCTCA 209
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | | |||| ||||| | ||||| ||||| ||||| | ||||||
Sbjct 210 GACACCATCGATAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATCCCACCAGACCAG 269
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || |||| || || || ||||| || || | || ||||| |||||||||
Sbjct 270 CAGAGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACCCTGGCAGACTACAAC 329
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899
||||||||||| |||| || ||| | |||
Sbjct 330 ATCCAGAAGGAATCCACCCTTCATTTGGTG 359
Score = 87.8 bits (96), Expect = 2e-12
Identities = 95/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Plus
Query 40774 AAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAA 40833
|| |||| ||||| ||||| |||||| ||||||| || || || |||| || || ||
Sbjct 6 AAGATTCAGGACAAGGAGGGAATCCCCCCGGACCAACAGCGTCTGATCTTTGCCGGAAAG 65
Query 40834 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCAT 40893
||||| || || | |||||||| || ||||||||||||||||| |||| || |||
Sbjct 66 CAGCTTGAGGATGGCCGCACCCTGGCAGATTACAACATCCAGAAGGAATCCACCCTTCAT 125
Query 40894 CTAGTG 40899
| |||
Sbjct 126 TTGGTG 131
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515200078927440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |