Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1187 102 1e-16 seq827 98.7 2e-15 seq2465 91.5 2e-13 >seq1187 Length=25466 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || |||||||| || || | || | ||| || Sbjct 20850 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 20909 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||||| ||| | ||| |||||| || ||||||||||| || ||||| ||||| Sbjct 20910 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 20969 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | || |||||||| || Sbjct 20970 GCAACGTCTGATTTTTGCTGG 20990 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || |||||||| || || | || | ||| || Sbjct 21133 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 21192 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||||| ||| | ||| |||||| || ||||||||||| || ||||| ||||| Sbjct 21193 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 21252 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | || |||||||| || Sbjct 21253 GCAACGTCTGATTTTTGCTGG 21273 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || |||||||| || || | || | ||| || Sbjct 21416 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 21475 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||||| ||| | ||| |||||| || ||||||||||| || ||||| ||||| Sbjct 21476 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 21535 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | || |||||||| || Sbjct 21536 GCAACGTCTGATTTTTGCTGG 21556 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || |||||||| || || | || | ||| || Sbjct 22267 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 22326 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||||| ||| | ||| |||||| || ||||||||||| || ||||| ||||| Sbjct 22327 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 22386 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | | || ||||| || Sbjct 22387 GCAACGTTTGATATTTGCTGG 22407 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | || || | ||||| ||||| || || | || |||| | Sbjct 20569 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 20628 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| ||||| || |||||||| |||||||| || ||||| |||||| Sbjct 20629 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 20688 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 || ||||||||||||| || Sbjct 20689 CAGCGGCTTATTTTTGCTGG 20708 >seq827 Length=57960 Score = 98.7 bits (108), Expect = 2e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || || ||||| |||||| | || | ||| || Sbjct 30920 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 30861 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 30860 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30801 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACA 124684 |||| | | |||||||| || || || Sbjct 30800 ACAACGTTTGATTTTTGCTGGTAAGCA 30774 Score = 95.1 bits (104), Expect = 2e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || || ||||| |||||| | || | ||| | Sbjct 30638 AATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATC 30579 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 30578 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30519 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACA 124684 |||| | | |||||||| || || || Sbjct 30518 ACAACGTTTGATTTTTGCTGGTAAGCA 30492 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| |||||| | || || | ||||| ||||| || || | || |||| || Sbjct 31555 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCA 31496 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||||||| ||| ||||| || |||||||| |||||||| || ||||| |||||| Sbjct 31495 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 31436 Query 124659 CAAAGGCTTATTTTTGCAGG 124678 || ||||||||||||| || Sbjct 31435 CAGCGGCTTATTTTTGCTGG 31416 Score = 93.3 bits (102), Expect = 6e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| || | ||||| || || || ||||| |||||| | || | ||| | Sbjct 30356 AATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATC 30297 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||||||| ||| | ||| ||||||||||||||||| || || ||||| ||||| Sbjct 30296 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30237 Query 124658 ACAAAGGCTTATTTTTGCAGGAAA 124681 |||| | | |||||||| || || Sbjct 30236 ACAACGTTTGATTTTTGCTGGTAA 30213 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 ||||||||| ||| | ||||| || || |||||||| || || | || | ||| || Sbjct 55632 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 55573 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 |||||||||| ||| | ||| |||||| || ||||||||||| || ||||| ||||| Sbjct 55572 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 55513 Query 124658 ACAAAGGCTTATTTTTGCAGG 124678 ||| | | || ||||| || Sbjct 55512 GCAACGTTTGATATTTGCTGG 55492 Score = 86.0 bits (94), Expect = 9e-12 Identities = 77/97 (79%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 124670 TTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGA 124729 ||||| ||||||||| || ||||||||| |||| || |||||||||||||||||||| Sbjct 29581 TTTTGTAGGAAAACAGTTGGAGGATAGTAGAACGTTGTCCGATTATAATATTCAAAAAGA 29522 Query 124730 ATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 | || ||||| || ||| | ||| | || |||||| Sbjct 29521 AAGCACATTGCACTTAGTTCTTCGTCTTCGCGGTGGT 29485 >seq2465 Length=325902 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| ||||| | |||||||| || || ||||||||||| |||| ||||| || Sbjct 18020 ATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 17961 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| |||||||| ||||| ||||| || || |||||||| Sbjct 17960 GACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 17901 Query 124659 CAAAGGCTTATTTTTGCAGGAAA 124681 ||||| | || |||||||| || Sbjct 17900 CAAAGATTAATCTTTGCAGGTAA 17878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755427963139200