Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq1187 102 1e-16
seq827 98.7 2e-15
seq2465 91.5 2e-13
>seq1187
Length=25466
Score = 102 bits (112), Expect = 1e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| || || |||||||| || || | || | ||| ||
Sbjct 20850 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 20909
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||||||| ||| | ||| |||||| || ||||||||||| || ||||| |||||
Sbjct 20910 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 20969
Query 124658 ACAAAGGCTTATTTTTGCAGG 124678
||| | || |||||||| ||
Sbjct 20970 GCAACGTCTGATTTTTGCTGG 20990
Score = 102 bits (112), Expect = 1e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| || || |||||||| || || | || | ||| ||
Sbjct 21133 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 21192
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||||||| ||| | ||| |||||| || ||||||||||| || ||||| |||||
Sbjct 21193 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 21252
Query 124658 ACAAAGGCTTATTTTTGCAGG 124678
||| | || |||||||| ||
Sbjct 21253 GCAACGTCTGATTTTTGCTGG 21273
Score = 102 bits (112), Expect = 1e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| || || |||||||| || || | || | ||| ||
Sbjct 21416 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 21475
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||||||| ||| | ||| |||||| || ||||||||||| || ||||| |||||
Sbjct 21476 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 21535
Query 124658 ACAAAGGCTTATTTTTGCAGG 124678
||| | || |||||||| ||
Sbjct 21536 GCAACGTCTGATTTTTGCTGG 21556
Score = 93.3 bits (102), Expect = 6e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| || || |||||||| || || | || | ||| ||
Sbjct 22267 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 22326
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||||||| ||| | ||| |||||| || ||||||||||| || ||||| |||||
Sbjct 22327 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 22386
Query 124658 ACAAAGGCTTATTTTTGCAGG 124678
||| | | || ||||| ||
Sbjct 22387 GCAACGTTTGATATTTGCTGG 22407
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| |||||| | || || | ||||| ||||| || || | || |||| |
Sbjct 20569 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 20628
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||||||| ||| ||||| || |||||||| |||||||| || ||||| ||||||
Sbjct 20629 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 20688
Query 124659 CAAAGGCTTATTTTTGCAGG 124678
|| ||||||||||||| ||
Sbjct 20689 CAGCGGCTTATTTTTGCTGG 20708
>seq827
Length=57960
Score = 98.7 bits (108), Expect = 2e-15
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| || | ||||| || || || ||||| |||||| | || | ||| ||
Sbjct 30920 AATGCAAATTTTCGTTAAGACCCTTACTGGAAAAACAATAACTTTGGAAGTAGAACCATC 30861
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| | ||| ||||||||||||||||| || || ||||| |||||
Sbjct 30860 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30801
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACA 124684
|||| | | |||||||| || || ||
Sbjct 30800 ACAACGTTTGATTTTTGCTGGTAAGCA 30774
Score = 95.1 bits (104), Expect = 2e-14
Identities = 109/147 (74%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| || | ||||| || || || ||||| |||||| | || | ||| |
Sbjct 30638 AATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATC 30579
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| | ||| ||||||||||||||||| || || ||||| |||||
Sbjct 30578 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30519
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACA 124684
|||| | | |||||||| || || ||
Sbjct 30518 ACAACGTTTGATTTTTGCTGGTAAGCA 30492
Score = 95.1 bits (104), Expect = 2e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| |||||| | || || | ||||| ||||| || || | || |||| ||
Sbjct 31555 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCA 31496
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||||||| ||| ||||| || |||||||| |||||||| || ||||| ||||||
Sbjct 31495 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCGGATCAA 31436
Query 124659 CAAAGGCTTATTTTTGCAGG 124678
|| ||||||||||||| ||
Sbjct 31435 CAGCGGCTTATTTTTGCTGG 31416
Score = 93.3 bits (102), Expect = 6e-14
Identities = 107/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| || | ||||| || || || ||||| |||||| | || | ||| |
Sbjct 30356 AATGCAAATTTTCGTTAAGACTCTTACTGGAAAAACAATAACTTTGGAAGTAGAACTATC 30297
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| | ||| ||||||||||||||||| || || ||||| |||||
Sbjct 30296 TGATACAATAGAAAATGTGAAAGGCAAAATTCAAGATAAAGAGGGAATTCCACCGGATCA 30237
Query 124658 ACAAAGGCTTATTTTTGCAGGAAA 124681
|||| | | |||||||| || ||
Sbjct 30236 ACAACGTTTGATTTTTGCTGGTAA 30213
Score = 93.3 bits (102), Expect = 6e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| || || |||||||| || || | || | ||| ||
Sbjct 55632 AATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATC 55573
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||||||| ||| | ||| |||||| || ||||||||||| || ||||| |||||
Sbjct 55572 TGATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCA 55513
Query 124658 ACAAAGGCTTATTTTTGCAGG 124678
||| | | || ||||| ||
Sbjct 55512 GCAACGTTTGATATTTGCTGG 55492
Score = 86.0 bits (94), Expect = 9e-12
Identities = 77/97 (79%), Gaps = 0/97 (0%)
Strand=Plus/Minus
Query 124670 TTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGA 124729
||||| ||||||||| || ||||||||| |||| || ||||||||||||||||||||
Sbjct 29581 TTTTGTAGGAAAACAGTTGGAGGATAGTAGAACGTTGTCCGATTATAATATTCAAAAAGA 29522
Query 124730 ATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766
| || ||||| || ||| | ||| | || ||||||
Sbjct 29521 AAGCACATTGCACTTAGTTCTTCGTCTTCGCGGTGGT 29485
>seq2465
Length=325902
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| ||||| | |||||||| || || ||||||||||| |||| ||||| ||
Sbjct 18020 ATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 17961
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || ||| | ||| |||||||| ||||| ||||| || || ||||||||
Sbjct 17960 GACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 17901
Query 124659 CAAAGGCTTATTTTTGCAGGAAA 124681
||||| | || |||||||| ||
Sbjct 17900 CAAAGATTAATCTTTGCAGGTAA 17878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755427963139200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |