Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq401 96.9 6e-15 >seq401 Length=108154 Score = 96.9 bits (106), Expect = 6e-15 Identities = 201/299 (67%), Gaps = 3/299 (1%) Strand=Plus/Minus Query 135637 GATCCTGTTTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCTTA 135696 ||||||||| | || ||||||| || ||||||| || |||| | || ||||| || Sbjct 56486 GATCCTGTTCTTCACGTAGAACTAAGACGATGGGCAGACATTTTGGTGATTGCGCCGTTG 56427 Query 135697 ACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATT 135756 |||||| || | || ||||| | ||||| || || |||||||| | || | | Sbjct 56426 GACGCAAATTCGATGGCGAAAATTTCCAATGGAATTTGTGATAATTTGTTAACAAGTTTG 56367 Query 135757 GTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTATG 135816 || |||| |||||| || || || | | ||||| ||||||||||| ||| Sbjct 56366 GTTCGAGCTTGGGATGGTGCAAAGCCGGTCTATATATGTCCCGCAATGAATACCTACATG 56307 Query 135817 TGGGAACATCCTATTACAGAAAAACATATAGATACGTTAAAATAT---ATGGGTTTCATA 135873 |||||||| || | || | ||||| || || | | | ||| || | || |||| | Sbjct 56306 TGGGAACACCCGTTAACGTATAAACAGATGGACAAGCTGAAAAATTTCTTTGGATTCAAA 56247 Query 135874 GAAATAGAATGCATAGaaaaaaaaCTAGCATGTGGAGACGTAGGAAATGGTGCTATGGC 135932 ||| | ||||| || ||| || || || || ||| || ||||||||||||| Sbjct 56246 GAAGTTCCTTGCATCGAGAAAGAATTAATGTGCGGTGACCGTGGTTATGGTGCTATGGC 56188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923162537858760