Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_002188.1
Length=288539
Score E
Sequences producing significant alignments: (Bits) Value
seq401 96.9 6e-15
>seq401
Length=108154
Score = 96.9 bits (106), Expect = 6e-15
Identities = 201/299 (67%), Gaps = 3/299 (1%)
Strand=Plus/Minus
Query 135637 GATCCTGTTTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCCCTTA 135696
||||||||| | || ||||||| || ||||||| || |||| | || ||||| ||
Sbjct 56486 GATCCTGTTCTTCACGTAGAACTAAGACGATGGGCAGACATTTTGGTGATTGCGCCGTTG 56427
Query 135697 ACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTATT 135756
|||||| || | || ||||| | ||||| || || |||||||| | || | |
Sbjct 56426 GACGCAAATTCGATGGCGAAAATTTCCAATGGAATTTGTGATAATTTGTTAACAAGTTTG 56367
Query 135757 GTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTATG 135816
|| |||| |||||| || || || | | ||||| ||||||||||| |||
Sbjct 56366 GTTCGAGCTTGGGATGGTGCAAAGCCGGTCTATATATGTCCCGCAATGAATACCTACATG 56307
Query 135817 TGGGAACATCCTATTACAGAAAAACATATAGATACGTTAAAATAT---ATGGGTTTCATA 135873
|||||||| || | || | ||||| || || | | | ||| || | || |||| |
Sbjct 56306 TGGGAACACCCGTTAACGTATAAACAGATGGACAAGCTGAAAAATTTCTTTGGATTCAAA 56247
Query 135874 GAAATAGAATGCATAGaaaaaaaaCTAGCATGTGGAGACGTAGGAAATGGTGCTATGGC 135932
||| | ||||| || ||| || || || || ||| || |||||||||||||
Sbjct 56246 GAAGTTCCTTGCATCGAGAAAGAATTAATGTGCGGTGACCGTGGTTATGGTGCTATGGC 56188
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 923162537858760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |