Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq1838 111 2e-19
seq2725 105 8e-18
seq2415 105 8e-18
seq380 105 8e-18
>seq1838
Length=927364
Score = 111 bits (122), Expect = 2e-19
Identities = 75/84 (89%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114
|| |||| |||||| |||| ||||||||||||| |||| |||||||||||||||| ||
Sbjct 394807 TGGAAAAACTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 394866
Query 60115 ACTCACCACTATACTACCGAGGAT 60138
||||||||||||||||||||||||
Sbjct 394867 ACTCACCACTATACTACCGAGGAT 394890
>seq2725
Length=220032
Score = 105 bits (116), Expect = 8e-18
Identities = 79/93 (85%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 60045 TTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGAC 60104
|||| | ||| || ||| |||| |||| ||||||||||||| |||| ||||||||||
Sbjct 42409 TTAAACTATATAAATAATCAACTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGAC 42350
Query 60105 AGGCGGACATACTCACCACTATACTACCGAGGA 60137
|||||| |||||||||||||||||||||||||
Sbjct 42349 AGGCGGGAATACTCACCACTATACTACCGAGGA 42317
>seq2415
Length=845780
Score = 105 bits (116), Expect = 8e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 602526 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 602467
Query 60126 TACTACCGAGGAT 60138
|||||||||||||
Sbjct 602466 TACTACCGAGGAT 602454
Score = 104 bits (114), Expect = 3e-17
Identities = 68/75 (91%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| |||| ||||||||||||| |||| ||||||||||||||| |||| |||||||
Sbjct 601848 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGCCCATATTCACCAC 601789
Query 60124 TATACTACCGAGGAT 60138
|||||||||||||||
Sbjct 601788 TATACTACCGAGGAT 601774
>seq380
Length=586333
Score = 105 bits (116), Expect = 8e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 184530 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 184589
Query 60126 TACTACCGAGGATTGA 60141
|||||||||||| |||
Sbjct 184590 TACTACCGAGGACTGA 184605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571796378419320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |