Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2810 168 6e-37 seq2603 149 6e-31 seq378 95.1 1e-14 seq11 91.5 1e-13 seq1187 82.4 7e-11 seq827 82.4 7e-11 >seq2810 Length=199988 Score = 168 bits (186), Expect = 6e-37 Identities = 258/364 (71%), Gaps = 3/364 (1%) Strand=Plus/Plus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 || ||||| || || || || || | | ||||| ||||| | | ||| ||||| || Sbjct 181994 TTATCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 182053 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 || ||||||||| ||||||| |||| ||||| || || |||||||| ||||| ||||| Sbjct 182054 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 182113 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 | | |||| | ||| |||||||| ||||| || || ||||| | ||||||||| Sbjct 182114 TCGGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCCCCTTTCGGCGGCC 182173 Query 22286 ATATTTATCAATGTACGCAT-CGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344 || | ||| | | || | || |||||||| || |||||||||| || | ||||| Sbjct 182174 ATGTCTAT-GACGCACTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTATCTC 182232 Query 22345 TAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAAT 22404 |||||| ||||||||| ||| | ||| || || ||| ||||| |||||||| Sbjct 182233 AGCCGGTATTGATTCGATCGACTGAATGGAGCCTTTGTTGGCGATGATTTCATTTTTAAG 182292 Query 22405 CGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA-CTT 22463 || || | ||| | ||| | || ||||||||| | || |||| | || || | ||| Sbjct 182293 CGATTCATCCCAAAGACCCAATTCGACCAAATCTTTCATCAAATGATGATTGACAATCTT 182352 Query 22464 GAAA 22467 ||| Sbjct 182353 AAAA 182356 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||||| ||| |||| || ||||| |||||||| || ||||| |||| || ||||| || Sbjct 183562 TTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCGTAAAACAAATCTCGGGCTCG 183621 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || || ||| |||||||||||| || | ||| || || | ||| || ||||| Sbjct 183622 GTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAATATGTCTGCGTGCCA 183681 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 || || | || || |||||||| || ||||||| Sbjct 183682 AGGTTCCAAATAGACCGCAAACGCCCCAGGTCTCT 183716 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659 ||||||| | || || | ||||||||||| ||| | ||||||||| ||||| ||| Sbjct 183941 GCTCGAATGCAATGGACATTCAAACCTATGCCACCGGCACTTTTCGATATAATCGCACAT 184000 Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTC 23694 | ||||| |||||||| ||||| ||||||||||| Sbjct 184001 TCTTTCAATGTGTCGTATATGCCTTCGATGCTGTC 184035 >seq2603 Length=690759 Score = 149 bits (164), Expect = 6e-31 Identities = 260/371 (70%), Gaps = 12/371 (3%) Strand=Plus/Minus Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 ||| || ||||||| |||||| | ||||| || ||||| | | || || || || || Sbjct 457374 GGTGGAGCGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCA 457315 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 | | ||||| ||||| || ||||| |||||||| || | ||||| || ||| | Sbjct 457314 AATTGCCATAGAAAATGTCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCG 457255 Query 57857 GGACAACGACGAGAAACGTAGA----CTGTTCAACGCGATCGAAACAATGCCC-GCGATC 57911 || | ||| ||| || ||||||||||||||||| || || || ||| | Sbjct 457254 TGATCCGGTGGAG---CGT-GATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCG-TG 457200 Query 57912 GCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGA 57970 || || ||||| ||| | | ||||| | || || | | | || ||| Sbjct 457199 AAGAAAAAAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCA-GTCGCCATTTTGCGA 457141 Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030 | | |||||||||| || |||||||| || |||||||| |||||||| ||| |||| Sbjct 457140 ACGTTTGGTCGCGTTCGCAGCTGTCGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAAT 457081 Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATC 58090 || ||| |||| || ||||||||||||||||| ||||||| ||||||||| |||| || Sbjct 457080 TTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTC 457021 Query 58091 GCGCGACGAGG 58101 || ||||||| Sbjct 457020 TCGTGACGAGG 457010 >seq378 Length=398 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || ||||||||||||||| | || || ||||| || Sbjct 115 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 174 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| | |||| ||| |||||||| | || || || ||| Sbjct 175 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 234 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||| | ||||| ||||| Sbjct 235 CAACGTTTGATATTTGCTGG 254 >seq11 Length=460 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || ||||||||||||||| | || || ||||| || Sbjct 60 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 119 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| | |||| ||| |||||||| | || || || || Sbjct 120 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 179 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 || ||| | ||||| ||||| || Sbjct 180 CAACGTTTGATATTTGCTGGTAA 202 >seq1187 Length=25466 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || |||||||| ||||| | || || ||||| || Sbjct 20851 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 20910 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| || |||| ||| || ||||| | || || || ||| Sbjct 20911 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 20970 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||||| || || ||||| Sbjct 20971 CAACGTCTGATTTTTGCTGG 20990 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || |||||||| ||||| | || || ||||| || Sbjct 21134 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 21193 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| || |||| ||| || ||||| | || || || ||| Sbjct 21194 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 21253 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||||| || || ||||| Sbjct 21254 CAACGTCTGATTTTTGCTGG 21273 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || |||||||| ||||| | || || ||||| || Sbjct 21417 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 21476 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| || |||| ||| || ||||| | || || || ||| Sbjct 21477 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 21536 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||||| || || ||||| Sbjct 21537 CAACGTCTGATTTTTGCTGG 21556 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || |||||||| ||||| | || || ||||| || Sbjct 22268 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 22327 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| || |||| ||| || ||||| | || || || ||| Sbjct 22328 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 22387 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||| | ||||| ||||| Sbjct 22388 CAACGTTTGATATTTGCTGG 22407 >seq827 Length=57960 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| || || |||||||| ||||| | || || ||||| || Sbjct 55631 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 55572 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || ||| || |||| ||| || ||||| | || || || ||| Sbjct 55571 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 55512 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||| | ||||| ||||| Sbjct 55511 CAACGTTTGATATTTGCTGG 55492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445749856494480