Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq2810 168 6e-37
seq2603 149 6e-31
seq378 95.1 1e-14
seq11 91.5 1e-13
seq1187 82.4 7e-11
seq827 82.4 7e-11
>seq2810
Length=199988
Score = 168 bits (186), Expect = 6e-37
Identities = 258/364 (71%), Gaps = 3/364 (1%)
Strand=Plus/Plus
Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165
|| ||||| || || || || || | | ||||| ||||| | | ||| ||||| ||
Sbjct 181994 TTATCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 182053
Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225
|| ||||||||| ||||||| |||| ||||| || || |||||||| ||||| |||||
Sbjct 182054 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 182113
Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285
| | |||| | ||| |||||||| ||||| || || ||||| | |||||||||
Sbjct 182114 TCGGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCCCCTTTCGGCGGCC 182173
Query 22286 ATATTTATCAATGTACGCAT-CGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTC 22344
|| | ||| | | || | || |||||||| || |||||||||| || | |||||
Sbjct 182174 ATGTCTAT-GACGCACTTTTGGGAAATTTCCCAAACCGTCTTGTACAATTCACGTATCTC 182232
Query 22345 TAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAAT 22404
|||||| ||||||||| ||| | ||| || || ||| ||||| ||||||||
Sbjct 182233 AGCCGGTATTGATTCGATCGACTGAATGGAGCCTTTGTTGGCGATGATTTCATTTTTAAG 182292
Query 22405 CGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCA-CTT 22463
|| || | ||| | ||| | || ||||||||| | || |||| | || || | |||
Sbjct 182293 CGATTCATCCCAAAGACCCAATTCGACCAAATCTTTCATCAAATGATGATTGACAATCTT 182352
Query 22464 GAAA 22467
|||
Sbjct 182353 AAAA 182356
Score = 91.5 bits (100), Expect = 1e-13
Identities = 113/155 (73%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400
||||| ||| |||| || ||||| |||||||| || ||||| |||| || ||||| ||
Sbjct 183562 TTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCGTAAAACAAATCTCGGGCTCG 183621
Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460
|| || ||| |||||||||||| || | ||| || || | ||| || |||||
Sbjct 183622 GTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAATATGTCTGCGTGCCA 183681
Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495
|| || | || || |||||||| || |||||||
Sbjct 183682 AGGTTCCAAATAGACCGCAAACGCCCCAGGTCTCT 183716
Score = 82.4 bits (90), Expect = 7e-11
Identities = 75/95 (79%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659
||||||| | || || | ||||||||||| ||| | ||||||||| ||||| |||
Sbjct 183941 GCTCGAATGCAATGGACATTCAAACCTATGCCACCGGCACTTTTCGATATAATCGCACAT 184000
Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTC 23694
| ||||| |||||||| ||||| |||||||||||
Sbjct 184001 TCTTTCAATGTGTCGTATATGCCTTCGATGCTGTC 184035
>seq2603
Length=690759
Score = 149 bits (164), Expect = 6e-31
Identities = 260/371 (70%), Gaps = 12/371 (3%)
Strand=Plus/Minus
Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796
||| || ||||||| |||||| | ||||| || ||||| | | || || || || ||
Sbjct 457374 GGTGGAGCGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCA 457315
Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856
| | ||||| ||||| || ||||| |||||||| || | ||||| || ||| |
Sbjct 457314 AATTGCCATAGAAAATGTCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCG 457255
Query 57857 GGACAACGACGAGAAACGTAGA----CTGTTCAACGCGATCGAAACAATGCCC-GCGATC 57911
|| | ||| ||| || ||||||||||||||||| || || || ||| |
Sbjct 457254 TGATCCGGTGGAG---CGT-GATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCG-TG 457200
Query 57912 GCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGA 57970
|| || ||||| ||| | | ||||| | || || | | | || |||
Sbjct 457199 AAGAAAAAAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCA-GTCGCCATTTTGCGA 457141
Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030
| | |||||||||| || |||||||| || |||||||| |||||||| ||| ||||
Sbjct 457140 ACGTTTGGTCGCGTTCGCAGCTGTCGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAAT 457081
Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATC 58090
|| ||| |||| || ||||||||||||||||| ||||||| ||||||||| |||| ||
Sbjct 457080 TTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTC 457021
Query 58091 GCGCGACGAGG 58101
|| |||||||
Sbjct 457020 TCGTGACGAGG 457010
>seq378
Length=398
Score = 95.1 bits (104), Expect = 1e-14
Identities = 105/140 (75%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 115 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 174
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| | |||| ||| |||||||| | || || || |||
Sbjct 175 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 234
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||| | ||||| |||||
Sbjct 235 CAACGTTTGATATTTGCTGG 254
>seq11
Length=460
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
|||||||||||||| |||||||| || ||||||||||||||| | || || ||||| ||
Sbjct 60 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 119
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | || | || ||| | |||| ||| |||||||| | || || || ||
Sbjct 120 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 179
Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335
|| ||| | ||||| ||||| ||
Sbjct 180 CAACGTTTGATATTTGCTGGTAA 202
>seq1187
Length=25466
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || ||||| || || |||||||| ||||| | || || ||||| ||
Sbjct 20851 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 20910
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| || ||| || |||| ||| || ||||| | || || || |||
Sbjct 20911 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 20970
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||||| || || |||||
Sbjct 20971 CAACGTCTGATTTTTGCTGG 20990
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || ||||| || || |||||||| ||||| | || || ||||| ||
Sbjct 21134 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 21193
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| || ||| || |||| ||| || ||||| | || || || |||
Sbjct 21194 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 21253
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||||| || || |||||
Sbjct 21254 CAACGTCTGATTTTTGCTGG 21273
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || ||||| || || |||||||| ||||| | || || ||||| ||
Sbjct 21417 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 21476
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| || ||| || |||| ||| || ||||| | || || || |||
Sbjct 21477 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 21536
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||||| || || |||||
Sbjct 21537 CAACGTCTGATTTTTGCTGG 21556
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || ||||| || || |||||||| ||||| | || || ||||| ||
Sbjct 22268 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 22327
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| || ||| || |||| ||| || ||||| | || || || |||
Sbjct 22328 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 22387
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||| | ||||| |||||
Sbjct 22388 CAACGTTTGATATTTGCTGG 22407
>seq827
Length=57960
Score = 82.4 bits (90), Expect = 7e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252
||||||||||| || ||||| || || |||||||| ||||| | || || ||||| ||
Sbjct 55631 ATGCAAATTTTTGTTAAGACCCTCACTGGCAAAACCATCACATTGGAAGTGGAACCATCT 55572
Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312
|| | | |||| || ||| || |||| ||| || ||||| | || || || |||
Sbjct 55571 GATACAATTGAAAATGTGAAAGGGAAAATACAGGATAAAGAAGGAATTCCACCAGATCAG 55512
Query 31313 CAGCGTCTAATATTCGCTGG 31332
|| ||| | ||||| |||||
Sbjct 55511 CAACGTTTGATATTTGCTGG 55492
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445749856494480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |