Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq2524 91.5 3e-13
>seq2524
Length=293867
Score = 91.5 bits (100), Expect = 3e-13
Identities = 215/317 (68%), Gaps = 6/317 (2%)
Strand=Plus/Plus
Query 35249 TTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAA 35308
|| ||||||||||| || |||||||| ||||||||||| || | || | || |||
Sbjct 136064 TTTTGGAGAGGAGTGGTCGAAGAACTGCTTTGGTTCATCAGTGGAAGCACCAATGCTAAA 136123
Query 35309 GAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGAC 35368
| | | ||||||| | |||| ||| | | ||| || | ||||| | |||
Sbjct 136124 CAGCTTTCAGAGAAGAATGTCAACATTTGGGATGGAAATTCTTCCAGAGAATTCCTAGAC 136183
Query 35369 AGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGG 35428
|||||||| | ||| || | ||| || |||||||| || || || || |||||||||
Sbjct 136184 AGTAGAGGACTGTACAATTATGAAGAAGGTGATTTGGGGCCTGTTTATGGTTTCCAATGG 136243
Query 35429 CGTCATTTTGG-TG-CTGAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTG 35486
|| || ||||| || | | || | || || | |||||||||| ||||| || |
Sbjct 136244 CGCCACTTTGGATGCCCGTAT-TCATCGATG-ACGGCCGATTATACAGGAAAAGGCTACG 136301
Query 35487 ATCAATT-GGCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATT 35545
||||||| || | || |||| | | | ||| | || || | || | || ||
Sbjct 136302 ATCAATTACAACAGTGTATTAAA-ATGATTCGTGAAGAACCGGAAAGTCGACGAATCATC 136360
Query 35546 ATGACGGCATGGAATCC 35562
||||| |||||||||||
Sbjct 136361 ATGACCGCATGGAATCC 136377
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989546355915395
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |