Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq2524 91.5 3e-13 >seq2524 Length=293867 Score = 91.5 bits (100), Expect = 3e-13 Identities = 215/317 (68%), Gaps = 6/317 (2%) Strand=Plus/Plus Query 35249 TTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAA 35308 || ||||||||||| || |||||||| ||||||||||| || | || | || ||| Sbjct 136064 TTTTGGAGAGGAGTGGTCGAAGAACTGCTTTGGTTCATCAGTGGAAGCACCAATGCTAAA 136123 Query 35309 GAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGAC 35368 | | | ||||||| | |||| ||| | | ||| || | ||||| | ||| Sbjct 136124 CAGCTTTCAGAGAAGAATGTCAACATTTGGGATGGAAATTCTTCCAGAGAATTCCTAGAC 136183 Query 35369 AGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGG 35428 |||||||| | ||| || | ||| || |||||||| || || || || ||||||||| Sbjct 136184 AGTAGAGGACTGTACAATTATGAAGAAGGTGATTTGGGGCCTGTTTATGGTTTCCAATGG 136243 Query 35429 CGTCATTTTGG-TG-CTGAATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTG 35486 || || ||||| || | | || | || || | |||||||||| ||||| || | Sbjct 136244 CGCCACTTTGGATGCCCGTAT-TCATCGATG-ACGGCCGATTATACAGGAAAAGGCTACG 136301 Query 35487 ATCAATT-GGCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATT 35545 ||||||| || | || |||| | | | ||| | || || | || | || || Sbjct 136302 ATCAATTACAACAGTGTATTAAA-ATGATTCGTGAAGAACCGGAAAGTCGACGAATCATC 136360 Query 35546 ATGACGGCATGGAATCC 35562 ||||| ||||||||||| Sbjct 136361 ATGACCGCATGGAATCC 136377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989546355915395