Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2810 120 4e-22 seq2603 82.4 1e-10 >seq2810 Length=199988 Score = 120 bits (132), Expect = 4e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 || |||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 181994 TTATCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 182053 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||| ||||| |||| ||||| |||||||| || | ||| | |||| |||| Sbjct 182054 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 182113 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || ||||| || ||||||| || || |||||| ||||| |||||||| || || ||| Sbjct 182114 TCGGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCCCCTTTCGGCGGCC 182173 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAA 62250 || | ||||| |||||| | ||||||||||| Sbjct 182174 ATGTCTATGACGCACTTTTGGGAAATTTCCCAAA 182207 Score = 105 bits (116), Expect = 8e-18 Identities = 177/251 (71%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 62591 ATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTT 62650 |||||| |||||||| ||||| || || ||| ||| || || ||||| || || Sbjct 182695 ATATTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGGCCAAACTG 182754 Query 62651 CTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTT 62710 | || | | ||||| ||||| ||| | ||||| ||||||||||| || ||||| Sbjct 182755 TTTTGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTT 182814 Query 62711 ATTTAG--ATCTTG-TGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTC 62767 ||| | |||| | | |||| || | ||||| ||||| | | |||||| || || Sbjct 182815 ATTCAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATC 182871 Query 62768 CGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTC 62827 ||| |||||||| ||||||||||| || |||| ||| | || ||||| |||| || | Sbjct 182872 CGCCAATCCTTGCACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT- 182930 Query 62828 TGGAATAGGAT 62838 ||| ||||| Sbjct 182931 --GAAAAGGAT 182939 Score = 104 bits (114), Expect = 3e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 63180 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACAC 63239 || ||| ||| ||||| || ||||| | || |||||| ||||||||||| || ||| Sbjct 183479 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 183538 Query 63240 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 63298 |||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| || Sbjct 183539 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 183597 Query 63299 AGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63358 || ||| | ||||| | || | ||| ||| ||||| |||||||| || || Sbjct 183598 GGCGTAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 183657 Query 63359 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394 || | | || || | ||||| |||||||| || Sbjct 183658 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 183693 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 |||||| |||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 182420 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 182479 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || ||||| || ||||||||||| || || |||||||||||||| || |||| ||| || Sbjct 182480 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 182539 Query 62507 ACTATTTCTAAGACCGTA 62524 |||||| ||||| || Sbjct 182540 CGAATTTCTCAGACCATA 182557 >seq2603 Length=690759 Score = 82.4 bits (90), Expect = 1e-10 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| |||||| ||| |||||||| || || |||||||||||||| || ||||| ||||| Sbjct 456525 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 456584 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATT 33370 || || || |||||| || || |||||||| Sbjct 456585 CAGCGAAATCAATTCCATAAAGTCGAACGGATT 456617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629794225894320