Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2810 125 9e-24 >seq2810 Length=199988 Score = 125 bits (138), Expect = 9e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 66735 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 66794 ||||| ||||| |||||||| | || ||||||| | | | ||||||| || ||| Sbjct 184582 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGGTATAAATCATCAATC 184641 Query 66795 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 66854 || || || || | |||||| ||||||||||| | ||| |||||||| | ||||| Sbjct 184642 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 184701 Query 66855 ATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 66914 | | ||||| |||||||||| |||||| ||||| | ||||| || |||| | || Sbjct 184702 AATGTCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 184761 Query 66915 TCCAATTCTACCGTTGTTACTCCATTATA 66943 |||||||| || ||||| || || | ||| Sbjct 184762 TCCAATTCGACAGTTGTCACACCTTGATA 184790 Score = 120 bits (132), Expect = 4e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889 || |||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 181994 TTATCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 182053 Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949 ||||| ||||| |||| ||||| |||||||| || | ||| | |||| |||| Sbjct 182054 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 182113 Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009 || ||||| || ||||||| || || |||||| ||||| |||||||| || || ||| Sbjct 182114 TCGGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCCCCTTTCGGCGGCC 182173 Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 65043 || | ||||| |||||| | ||||||||||| Sbjct 182174 ATGTCTATGACGCACTTTTGGGAAATTTCCCAAA 182207 Score = 113 bits (124), Expect = 6e-20 Identities = 129/171 (75%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 65973 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 66032 || ||| ||| ||||| || ||||| | || |||||||||||||||||| || ||| Sbjct 183479 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 183538 Query 66033 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 66091 |||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| || Sbjct 183539 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 183597 Query 66092 AGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 66142 || ||| ||||||| || || | ||| ||| ||||| |||||||| Sbjct 183598 GGCGTAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTT 183648 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||||||||||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 182420 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 182479 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 || ||||| || ||||||||||| || || |||||||||||||| || |||| ||| || Sbjct 182480 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 182539 Query 65300 ACTATTTCTAAGACCGTA 65317 |||||| ||||| || Sbjct 182540 CGAATTTCTCAGACCATA 182557 Score = 100 bits (110), Expect = 4e-16 Identities = 174/248 (70%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 65387 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 65446 ||| |||||||| ||||| || || ||| ||| || |||||||| || || | Sbjct 182698 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGGCCAAACTGTTT 182757 Query 65447 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 65506 || | || ||||| ||||| ||| | ||||| |||||||| || || |||||||| Sbjct 182758 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 182817 Query 65507 TAG--ATCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 65563 | |||| | | |||| || | ||||| ||||| | | |||||| || || || Sbjct 182818 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATCCGC 182874 Query 65564 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 65623 |||||||| ||||||||||| || |||| ||| | || ||||| |||| || | | Sbjct 182875 CAATCCTTGCACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 182931 Query 65624 AATAGGAT 65631 || ||||| Sbjct 182932 AAAAGGAT 182939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658148373561960