Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq2810 125 9e-24
>seq2810
Length=199988
Score = 125 bits (138), Expect = 9e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 66735 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 66794
||||| ||||| |||||||| | || ||||||| | | | ||||||| || |||
Sbjct 184582 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGGTATAAATCATCAATC 184641
Query 66795 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 66854
|| || || || | |||||| ||||||||||| | ||| |||||||| | |||||
Sbjct 184642 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 184701
Query 66855 ATAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 66914
| | ||||| |||||||||| |||||| ||||| | ||||| || |||| | ||
Sbjct 184702 AATGTCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 184761
Query 66915 TCCAATTCTACCGTTGTTACTCCATTATA 66943
|||||||| || ||||| || || | |||
Sbjct 184762 TCCAATTCGACAGTTGTCACACCTTGATA 184790
Score = 120 bits (132), Expect = 4e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 64830 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 64889
|| |||| ||||||||||| | | ||| || || || | | ||||||||| ||
Sbjct 181994 TTATCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 182053
Query 64890 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 64949
||||| ||||| |||| ||||| |||||||| || | ||| | |||| ||||
Sbjct 182054 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 182113
Query 64950 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 65009
|| ||||| || ||||||| || || |||||| ||||| |||||||| || || |||
Sbjct 182114 TCGGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCCCCTTTCGGCGGCC 182173
Query 65010 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 65043
|| | ||||| |||||| | |||||||||||
Sbjct 182174 ATGTCTATGACGCACTTTTGGGAAATTTCCCAAA 182207
Score = 113 bits (124), Expect = 6e-20
Identities = 129/171 (75%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 65973 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 66032
|| ||| ||| ||||| || ||||| | || |||||||||||||||||| || |||
Sbjct 183479 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 183538
Query 66033 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 66091
|||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| ||
Sbjct 183539 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 183597
Query 66092 AGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 66142
|| ||| ||||||| || || | ||| ||| ||||| ||||||||
Sbjct 183598 GGCGTAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTT 183648
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239
||||||||||||||| || | || | ||||| || | ||| || |||| ||| ||
Sbjct 182420 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 182479
Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299
|| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| ||
Sbjct 182480 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 182539
Query 65300 ACTATTTCTAAGACCGTA 65317
|||||| ||||| ||
Sbjct 182540 CGAATTTCTCAGACCATA 182557
Score = 100 bits (110), Expect = 4e-16
Identities = 174/248 (70%), Gaps = 9/248 (4%)
Strand=Plus/Plus
Query 65387 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 65446
||| |||||||| ||||| || || ||| ||| || |||||||| || || |
Sbjct 182698 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGGCCAAACTGTTT 182757
Query 65447 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 65506
|| | || ||||| ||||| ||| | ||||| |||||||| || || ||||||||
Sbjct 182758 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 182817
Query 65507 TAG--ATCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 65563
| |||| | | |||| || | ||||| ||||| | | |||||| || || ||
Sbjct 182818 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATCCGC 182874
Query 65564 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 65623
|||||||| ||||||||||| || |||| ||| | || ||||| |||| || | |
Sbjct 182875 CAATCCTTGCACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 182931
Query 65624 AATAGGAT 65631
|| |||||
Sbjct 182932 AAAAGGAT 182939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658148373561960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |