Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq1187 86.0 6e-12
seq827 86.0 6e-12
>seq1187
Length=25466
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682
|||||||| | || || || || ||||| || || |||||||||||||| || ||
Sbjct 20710 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 20651
Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742
||||| | ||| | ||| || | ||||| || |||| || | ||| || || ||||
Sbjct 20650 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 20591
Query 139743 ACGTTTTTACGAATATTTGCAT 139764
||||||| || ||||| |||||
Sbjct 20590 ACGTTTTCACAAATATCTGCAT 20569
>seq827
Length=57960
Score = 86.0 bits (94), Expect = 6e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 139623 TACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTT 139682
|||||||| | || || || || ||||| || || |||||||||||||| || ||
Sbjct 31414 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 31473
Query 139683 GTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCA 139742
||||| | ||| | ||| || | ||||| || |||| || | ||| || || ||||
Sbjct 31474 TTTTTACATTTTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 31533
Query 139743 ACGTTTTTACGAATATTTGCAT 139764
||||||| || ||||| |||||
Sbjct 31534 ACGTTTTCACAAATATCTGCAT 31555
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496045589824800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |