Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2810 140 5e-28 >seq2810 Length=199988 Score = 140 bits (154), Expect = 5e-28 Identities = 209/294 (71%), Gaps = 7/294 (2%) Strand=Plus/Plus Query 79219 GATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCG 79278 |||||||||||||| | ||| | || ||||||||| | |||||||| |||||||| Sbjct 182651 GATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCC 182710 Query 79279 TTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAA 79338 |||||||| ||| ||| || || || || || || || || || || || ||| Sbjct 182711 TTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGGCCAAACTGTTTTGCCAAATCGCAA 182770 Query 79339 CTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGA--GATCTTGTG 79396 || ||||| || | ||||| |||||||| ||||| |||||||| | |||| | Sbjct 182771 CTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCT--AG 182828 Query 79397 CTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACAC 79456 ||||| | ||||| ||||| | | |||||| || || || |||||||| |||| Sbjct 182829 CTTCTTCGGATTCAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGCACAC 182888 Query 79457 CAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGAT 79510 ||||||| || |||| ||| | || ||||| |||| || | ||| ||||| Sbjct 182889 CAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---GAAAAGGAT 182939 Score = 125 bits (138), Expect = 1e-23 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768 || |||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 181994 TTATCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 182053 Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828 ||||| ||||| |||| |||||||||||||| || | ||| | |||| |||| Sbjct 182054 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 182113 Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888 || ||||| || ||||||| || || |||||| ||||| |||||||| || || ||| Sbjct 182114 TCGGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCCCCTTTCGGCGGCC 182173 Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 78922 || | ||||| |||||| | ||||||||||| Sbjct 182174 ATGTCTATGACGCACTTTTGGGAAATTTCCCAAA 182207 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 79852 TATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACAC 79911 |||||| ||| ||||| || ||||| | ||| | |||||||||||||| | ||| ||| Sbjct 183479 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 183538 Query 79912 ATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 79971 |||| ||||| ||||| || | | | || ||||| || |||||||| ||||| || Sbjct 183539 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 183598 Query 79972 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 80031 || ||| | ||||| || || | || ||| ||||| |||||||| || || Sbjct 183599 GCGTAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 183658 Query 80032 AACGCCATAATATCAGAATGCCACGGTTCCAAGTA 80066 || | | || || | ||||| |||||||| || Sbjct 183659 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 183693 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||||||||||||||| || | || | ||||| || | ||| || || | ||| || Sbjct 182420 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 182479 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 |||||||| || ||||||||||| || || ||||| || ||||| || |||| ||| || Sbjct 182480 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 182539 Query 79179 ACTATTTCTAAGACCGTA 79196 |||||| ||||| || Sbjct 182540 CGAATTTCTCAGACCATA 182557 Score = 87.8 bits (96), Expect = 3e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 79659 ATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718 |||||| | ||||| ||||| ||||| ||| || || || || | |||||| ||||| Sbjct 183226 ATATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATT 183285 Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778 ||| | || |||||||| || || | || ||||| || ||||||||||| ||||| Sbjct 183286 CGATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCAGTTTCAATTTGAGA 183345 Query 79779 TTCTATAATCGCTTTCCA 79796 || ||||| || | ||| Sbjct 183346 CTCAATAATTGCGTACCA 183363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718242143249160