Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_003663.2
Length=224499
Score E
Sequences producing significant alignments: (Bits) Value
seq2810 140 5e-28
>seq2810
Length=199988
Score = 140 bits (154), Expect = 5e-28
Identities = 209/294 (71%), Gaps = 7/294 (2%)
Strand=Plus/Plus
Query 79219 GATTCCCAATCCCAAAGATCAGACGGGACAACATTCCAAAGATCATATTGTAGAATACCG 79278
|||||||||||||| | ||| | || ||||||||| | |||||||| ||||||||
Sbjct 182651 GATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCACATGTCATATTGAAGAATACCC 182710
Query 79279 TTACTAGCGTATGATCCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAA 79338
|||||||| ||| ||| || || || || || || || || || || || |||
Sbjct 182711 TTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGGCCAAACTGTTTTGCCAAATCGCAA 182770
Query 79339 CTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAAATCTTCTTATTGA--GATCTTGTG 79396
|| ||||| || | ||||| |||||||| ||||| |||||||| | |||| |
Sbjct 182771 CTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAATCT--AG 182828
Query 79397 CTTCTAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACAC 79456
||||| | ||||| ||||| | | |||||| || || || |||||||| ||||
Sbjct 182829 CTTCTTCGGATTCAAACGGATATCGCATCAAAATAAAAGCATCCGCCAATCCTTGCACAC 182888
Query 79457 CAATACCGATAGGTCTATGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGAT 79510
||||||| || |||| ||| | || ||||| |||| || | ||| |||||
Sbjct 182889 CAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---GAAAAGGAT 182939
Score = 125 bits (138), Expect = 1e-23
Identities = 156/214 (73%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 78709 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 78768
|| |||| ||||||||||| | | ||| || || || | | ||||||||| ||
Sbjct 181994 TTATCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 182053
Query 78769 GTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGA 78828
||||| ||||| |||| |||||||||||||| || | ||| | |||| ||||
Sbjct 182054 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 182113
Query 78829 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 78888
|| ||||| || ||||||| || || |||||| ||||| |||||||| || || |||
Sbjct 182114 TCGGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCCCCTTTCGGCGGCC 182173
Query 78889 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 78922
|| | ||||| |||||| | |||||||||||
Sbjct 182174 ATGTCTATGACGCACTTTTGGGAAATTTCCCAAA 182207
Score = 104 bits (114), Expect = 3e-17
Identities = 152/215 (71%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 79852 TATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACAC 79911
|||||| ||| ||||| || ||||| | ||| | |||||||||||||| | ||| |||
Sbjct 183479 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 183538
Query 79912 ATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 79971
|||| ||||| ||||| || | | | || ||||| || |||||||| ||||| ||
Sbjct 183539 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 183598
Query 79972 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 80031
|| ||| | ||||| || || | || ||| ||||| |||||||| || ||
Sbjct 183599 GCGTAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 183658
Query 80032 AACGCCATAATATCAGAATGCCACGGTTCCAAGTA 80066
|| | | || || | ||||| |||||||| ||
Sbjct 183659 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 183693
Score = 91.5 bits (100), Expect = 2e-13
Identities = 103/138 (75%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118
||||||||||||||| || | || | ||||| || | ||| || || | ||| ||
Sbjct 182420 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 182479
Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178
|||||||| || ||||||||||| || || ||||| || ||||| || |||| ||| ||
Sbjct 182480 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 182539
Query 79179 ACTATTTCTAAGACCGTA 79196
|||||| ||||| ||
Sbjct 182540 CGAATTTCTCAGACCATA 182557
Score = 87.8 bits (96), Expect = 3e-12
Identities = 102/138 (74%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 79659 ATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATT 79718
|||||| | ||||| ||||| ||||| ||| || || || || | |||||| |||||
Sbjct 183226 ATATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATT 183285
Query 79719 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGA 79778
||| | || |||||||| || || | || ||||| || ||||||||||| |||||
Sbjct 183286 CGATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCAGTTTCAATTTGAGA 183345
Query 79779 TTCTATAATCGCTTTCCA 79796
|| ||||| || | |||
Sbjct 183346 CTCAATAATTGCGTACCA 183363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 718242143249160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |