Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq2810 125 1e-23
>seq2810
Length=199988
Score = 125 bits (138), Expect = 1e-23
Identities = 128/167 (77%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898
||||||||| || ||||| ||||| |||| ||||| |||||||| || | |||
Sbjct 182041 ATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTT 182100
Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958
| ||| | || ||||||||||||||||||| |||||| |||||| ||||| |||||
Sbjct 182101 AGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCC 182160
Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 71005
||| || || ||||| | ||||| |||||| | |||||||||||
Sbjct 182161 CCTTTCGGCGGCCATGTCTATGACGCACTTTTGGGAAATTTCCCAAA 182207
Score = 107 bits (118), Expect = 3e-18
Identities = 106/137 (77%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201
||||||||||||||| || | || | |||||| || | ||| || |||| ||| ||
Sbjct 182420 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 182479
Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261
||| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| |
Sbjct 182480 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 182539
Query 71262 ACTATTTCTAAGACCAT 71278
|||||| |||||||
Sbjct 182540 CGAATTTCTCAGACCAT 182556
Score = 100 bits (110), Expect = 4e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 71935 TATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACAC 71994
|||||| ||| ||||| || ||||| || | |||||||||||||||| || |||
Sbjct 183479 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 183538
Query 71995 ATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054
|||| |||||| ||||| || | | | || ||||| || |||||||| ||||| ||
Sbjct 183539 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 183598
Query 72055 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114
|| ||| | ||||| || || | || ||| ||||| |||||||| || ||
Sbjct 183599 GCGTAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 183658
Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149
|| | | || || | ||||| |||||||| ||
Sbjct 183659 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 183693
Score = 93.3 bits (102), Expect = 6e-14
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 71739 GGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 71798
|| |||||| | |||||| ||||| || || ||| || || || || | |||||| ||
Sbjct 183223 GGAATATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTG 183282
Query 71799 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTG 71858
||| ||| | || |||||||| || || | |||||||| || ||||||||||| ||
Sbjct 183283 ATTCGATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCAGTTTCAATTTG 183342
Query 71859 AGATTCTATAATCGCTTTCCA 71879
||| || ||||| || | |||
Sbjct 183343 AGACTCAATAATTGCGTACCA 183363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671114292346440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |