Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2810 125 1e-23 >seq2810 Length=199988 Score = 125 bits (138), Expect = 1e-23 Identities = 128/167 (77%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 70839 ATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTT 70898 ||||||||| || ||||| ||||| |||| ||||| |||||||| || | ||| Sbjct 182041 ATAGTACATCCCAGTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTT 182100 Query 70899 GGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCC 70958 | ||| | || ||||||||||||||||||| |||||| |||||| ||||| ||||| Sbjct 182101 AGCATAATTCGGCTCGGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCC 182160 Query 70959 CCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 71005 ||| || || ||||| | ||||| |||||| | ||||||||||| Sbjct 182161 CCTTTCGGCGGCCATGTCTATGACGCACTTTTGGGAAATTTCCCAAA 182207 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 71142 TACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCAC 71201 ||||||||||||||| || | || | |||||| || | ||| || |||| ||| || Sbjct 182420 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 182479 Query 71202 TGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAG 71261 ||| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| | Sbjct 182480 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 182539 Query 71262 ACTATTTCTAAGACCAT 71278 |||||| ||||||| Sbjct 182540 CGAATTTCTCAGACCAT 182556 Score = 100 bits (110), Expect = 4e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 71935 TATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACAC 71994 |||||| ||| ||||| || ||||| || | |||||||||||||||| || ||| Sbjct 183479 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 183538 Query 71995 ATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGA 72054 |||| |||||| ||||| || | | | || ||||| || |||||||| ||||| || Sbjct 183539 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGG 183598 Query 72055 GCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGG 72114 || ||| | ||||| || || | || ||| ||||| |||||||| || || Sbjct 183599 GCGTAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGA 183658 Query 72115 AACGCCATAATATCAGAATGCCACGGTTCCAAGTA 72149 || | | || || | ||||| |||||||| || Sbjct 183659 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 183693 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 71739 GGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTG 71798 || |||||| | |||||| ||||| || || ||| || || || || | |||||| || Sbjct 183223 GGAATATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTG 183282 Query 71799 ATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTG 71858 ||| ||| | || |||||||| || || | |||||||| || ||||||||||| || Sbjct 183283 ATTCGATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCAGTTTCAATTTG 183342 Query 71859 AGATTCTATAATCGCTTTCCA 71879 ||| || ||||| || | ||| Sbjct 183343 AGACTCAATAATTGCGTACCA 183363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671114292346440