Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq2810 102 1e-16
>seq2810
Length=199988
Score = 102 bits (112), Expect = 1e-16
Identities = 152/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 96906 GCCGTCTACTTGGAACCTTGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAA-- 96963
|| ||||| ||||||||||||||||| ||| | ||||| ||| | || ||| ||||
Sbjct 183699 GCGGTCTATTTGGAACCTTGGCACGCAGACATATTTGATTTTCTTGAC--GCGAAAAAGA 183642
Query 96964 ACTCTGGCTTTGAAGAGGCACGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATT 97023
|| | ||| | ||||| |||||| | || |||||||| || |||||| | || |||
Sbjct 183641 ACACAGGCGTCGAAGAAAACCGAGCCCGAGATTTGTTTTACGCCCTCTGGATACCTGATC 183582
Query 97024 TGTTCATGAAGCGCGTCAACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCAC 97083
| |||||||||||| | | | || || | ||| || |||||||| | | |
Sbjct 183581 TATTCATGAAGCGCATTGAAGCCGACGGAGATTGGTCACTGATGTGCCCTCATGAATGTC 183522
Query 97084 CCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTGA 97117
| || || | |||| |||||||| ||||||||
Sbjct 183521 CTGGATTGGCGGATTTGTGGGGCGATGAGTTTGA 183488
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741031697440440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |