Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_004690.1
Length=113220
Score E
Sequences producing significant alignments: (Bits) Value
seq827 105 5e-18
seq11 105 5e-18
seq378 100 2e-16
seq1187 96.9 3e-15
seq2465 87.8 1e-12
seq1696 82.4 6e-11
>seq827
Length=57960
Score = 105 bits (116), Expect = 5e-18
Identities = 113/147 (77%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 15218 TGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATT 15277
|| || ||||| | |||||||||||||| || ||||||||| ||||| || ||||
Sbjct 30492 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30551
Query 15278 TTGCTCTTTACAATTTCTATGGTATC-GCTATTTTCTACATCTAAGGTAATGGTTTTACC 15336
|||| || ||| ||||||| ||||| | || |||||| || || || || ||||| ||
Sbjct 30552 TTGCCTTTCACATTTTCTATTGTATCAGATA-GTTCTACTTCCAAAGTTATTGTTTTTCC 30610
Query 15337 TGTCAGAGTTTTTACAAAAATTTGCAT 15363
|| ||||| || || |||||||||||
Sbjct 30611 AGTAAGAGTCTTAACGAAAATTTGCAT 30637
Score = 104 bits (114), Expect = 2e-17
Identities = 111/144 (77%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | |||||||||||||| || ||||||||| ||||| || |||||||
Sbjct 30213 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 30272
Query 15281 CTCTTTACAATTTCTATGGTATC-GCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339
| || ||| ||||||| ||||| | || |||||| || || || || ||||| || ||
Sbjct 30273 CCTTTCACATTTTCTATTGTATCAGATA-GTTCTACTTCCAAAGTTATTGTTTTTCCAGT 30331
Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363
||||| || || |||||||||||
Sbjct 30332 AAGAGTCTTAACGAAAATTTGCAT 30355
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 15218 TGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATT 15277
|| || ||||| | |||||||||||||| || ||||||||| ||||| || ||||
Sbjct 30774 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30833
Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337
|||| || ||| ||||||| ||||| |||||| || || || || ||||| ||
Sbjct 30834 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 30893
Query 15338 GTCAGAGTTTTTACAAAAATTTGCAT 15363
|| || || || || |||||||||||
Sbjct 30894 GTAAGGGTCTTAACGAAAATTTGCAT 30919
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| ||||||||||||| || || ||||||||||||||| || ||||| |
Sbjct 55492 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 55551
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|| ||| |||| || ||||| ||| || || || || |||||||| || || ||
Sbjct 55552 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 55611
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||||||
Sbjct 55612 GTCTTAACAAAAATTTGCAT 55631
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | |||| ||| ||||| ||| ||||||||| ||||| || ||||||
Sbjct 31745 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 31804
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
| || ||| |||| || | || ||| || || | ||||||||||| || |||
Sbjct 31805 CCTTTCACATTTTCAATTGAGTCTAAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 31864
Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366
|||||||| ||||| || ||||| ||
Sbjct 31865 AGAGTTTTCACAAATATCTGCATTTT 31890
>seq11
Length=460
Score = 105 bits (116), Expect = 5e-18
Identities = 109/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| |||||||||||||||| || |||||||||||| || || ||||||
Sbjct 202 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 143
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
| |||||| | ||||| ||||| |||||| || ||||| || ||||| || ||
Sbjct 142 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 83
Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363
||||| || || |||||||||||
Sbjct 82 AGAGTCTTAACGAAAATTTGCAT 60
>seq378
Length=398
Score = 100 bits (110), Expect = 2e-16
Identities = 106/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| ||||||||||||| || || |||||||||||| || || |||||||
Sbjct 254 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 195
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| |||||| || ||||| || ||||| || || |||
Sbjct 194 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 135
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || || |||||||||||
Sbjct 134 GTCTTAACGAAAATTTGCAT 115
>seq1187
Length=25466
Score = 96.9 bits (106), Expect = 3e-15
Identities = 109/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | |||| ||||||||| ||| ||||||||| ||||| || ||||||
Sbjct 20379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 20320
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
| ||| ||| |||| ||||| || || || || | ||||||||||| || |||
Sbjct 20319 CCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 20260
Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366
|||||||| ||||| || ||||| ||
Sbjct 20259 AGAGTTTTGACAAATATCTGCATTTT 20234
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| ||||||||||||| || || ||||||||||||||| || ||||| |
Sbjct 22407 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 22348
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|| ||| |||| || ||||| ||| || || || || |||||||| || || ||
Sbjct 22347 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 22288
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||||||
Sbjct 22287 GTCTTAACAAAAATTTGCAT 22268
Score = 86.0 bits (94), Expect = 5e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||||||||||||| || |||||||||||| || || ||||| |
Sbjct 21839 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21780
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|| ||| |||| || ||||| ||| || || || || |||||||| || || ||
Sbjct 21779 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21720
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||||||
Sbjct 21719 GTCTTAACAAAAATTTGCAT 21700
Score = 86.0 bits (94), Expect = 5e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || |||||||||||| || || |||||||
Sbjct 22124 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22065
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|||||| | ||||| ||||| |||||| || || || || ||||| || || |||
Sbjct 22064 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTTATTGTTTTTCCAGTAAGA 22005
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || || |||||||||||
Sbjct 22004 GTCTTAACGAAAATTTGCAT 21985
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || ||||||||||||||| || ||||| |
Sbjct 20990 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 20931
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|| ||| |||| || ||||| ||| || || || || |||||||| || || ||
Sbjct 20930 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 20871
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||||||
Sbjct 20870 GTCTTAACAAAAATTTGCAT 20851
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || ||||||||||||||| || ||||| |
Sbjct 21273 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21214
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|| ||| |||| || ||||| ||| || || || || |||||||| || || ||
Sbjct 21213 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21154
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||||||
Sbjct 21153 GTCTTAACAAAAATTTGCAT 21134
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/140 (73%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283
||||| | |||| |||||| || || ||||||||||||||| || ||||| |
Sbjct 21556 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21497
Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343
|| ||| |||| || ||||| ||| || || || || |||||||| || || ||
Sbjct 21496 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21437
Query 15344 GTTTTTACAAAAATTTGCAT 15363
|| || ||||||||||||||
Sbjct 21436 GTCTTAACAAAAATTTGCAT 21417
>seq2465
Length=325902
Score = 87.8 bits (96), Expect = 1e-12
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| ||||||| || || || || |||||| ||||||||||| |||||||
Sbjct 16914 TTACCAGCAAATATCAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTG 16973
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340
|| || ||| |||| || || || | ||||| || || || || ||||| || ||
Sbjct 16974 CTTTTCACATTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTT 17033
Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363
| ||||| |||||||| |||||
Sbjct 17034 AATGTTTTCACAAAAATCTGCAT 17056
>seq1696
Length=245
Score = 82.4 bits (90), Expect = 6e-11
Identities = 86/113 (76%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280
|| ||||| | |||||||||||||| || ||||||||||||||| || ||||||
Sbjct 113 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCCTGTATTTTG 54
Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333
| ||||||| | ||||| ||||| |||||| || ||||| || |||||
Sbjct 53 CCCTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 362166094658829
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |