Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq827 105 5e-18 seq11 105 5e-18 seq378 100 2e-16 seq1187 96.9 3e-15 seq2465 87.8 1e-12 seq1696 82.4 6e-11 >seq827 Length=57960 Score = 105 bits (116), Expect = 5e-18 Identities = 113/147 (77%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 15218 TGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATT 15277 || || ||||| | |||||||||||||| || ||||||||| ||||| || |||| Sbjct 30492 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30551 Query 15278 TTGCTCTTTACAATTTCTATGGTATC-GCTATTTTCTACATCTAAGGTAATGGTTTTACC 15336 |||| || ||| ||||||| ||||| | || |||||| || || || || ||||| || Sbjct 30552 TTGCCTTTCACATTTTCTATTGTATCAGATA-GTTCTACTTCCAAAGTTATTGTTTTTCC 30610 Query 15337 TGTCAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| || || ||||||||||| Sbjct 30611 AGTAAGAGTCTTAACGAAAATTTGCAT 30637 Score = 104 bits (114), Expect = 2e-17 Identities = 111/144 (77%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||||||||||||| || ||||||||| ||||| || ||||||| Sbjct 30213 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 30272 Query 15281 CTCTTTACAATTTCTATGGTATC-GCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 | || ||| ||||||| ||||| | || |||||| || || || || ||||| || || Sbjct 30273 CCTTTCACATTTTCTATTGTATCAGATA-GTTCTACTTCCAAAGTTATTGTTTTTCCAGT 30331 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || ||||||||||| Sbjct 30332 AAGAGTCTTAACGAAAATTTGCAT 30355 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 15218 TGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATT 15277 || || ||||| | |||||||||||||| || ||||||||| ||||| || |||| Sbjct 30774 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30833 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 |||| || ||| ||||||| ||||| |||||| || || || || ||||| || Sbjct 30834 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 30893 Query 15338 GTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||||||||| Sbjct 30894 GTAAGGGTCTTAACGAAAATTTGCAT 30919 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| ||||||||||||| || || ||||||||||||||| || ||||| | Sbjct 55492 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 55551 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || ||| |||| || ||||| ||| || || || || |||||||| || || || Sbjct 55552 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 55611 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| Sbjct 55612 GTCTTAACAAAAATTTGCAT 55631 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||| ||| ||||| ||| ||||||||| ||||| || |||||| Sbjct 31745 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 31804 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | || ||| |||| || | || ||| || || | ||||||||||| || ||| Sbjct 31805 CCTTTCACATTTTCAATTGAGTCTAAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 31864 Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366 |||||||| ||||| || ||||| || Sbjct 31865 AGAGTTTTCACAAATATCTGCATTTT 31890 >seq11 Length=460 Score = 105 bits (116), Expect = 5e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| |||||||||||||||| || |||||||||||| || || |||||| Sbjct 202 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 143 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | |||||| | ||||| ||||| |||||| || ||||| || ||||| || || Sbjct 142 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 83 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 ||||| || || ||||||||||| Sbjct 82 AGAGTCTTAACGAAAATTTGCAT 60 >seq378 Length=398 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| ||||||||||||| || || |||||||||||| || || ||||||| Sbjct 254 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 195 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 |||||| | ||||| ||||| |||||| || ||||| || ||||| || || ||| Sbjct 194 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 135 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || || ||||||||||| Sbjct 134 GTCTTAACGAAAATTTGCAT 115 >seq1187 Length=25466 Score = 96.9 bits (106), Expect = 3e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||| ||||||||| ||| ||||||||| ||||| || |||||| Sbjct 20379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 20320 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 | ||| ||| |||| ||||| || || || || | ||||||||||| || ||| Sbjct 20319 CCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 20260 Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366 |||||||| ||||| || ||||| || Sbjct 20259 AGAGTTTTGACAAATATCTGCATTTT 20234 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| ||||||||||||| || || ||||||||||||||| || ||||| | Sbjct 22407 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 22348 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || ||| |||| || ||||| ||| || || || || |||||||| || || || Sbjct 22347 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 22288 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| Sbjct 22287 GTCTTAACAAAAATTTGCAT 22268 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| | |||||||||||||| || |||||||||||| || || ||||| | Sbjct 21839 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21780 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || ||| |||| || ||||| ||| || || || || |||||||| || || || Sbjct 21779 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21720 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| Sbjct 21719 GTCTTAACAAAAATTTGCAT 21700 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| | |||| |||||| || || |||||||||||| || || ||||||| Sbjct 22124 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22065 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 |||||| | ||||| ||||| |||||| || || || || ||||| || || ||| Sbjct 22064 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTTATTGTTTTTCCAGTAAGA 22005 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || || ||||||||||| Sbjct 22004 GTCTTAACGAAAATTTGCAT 21985 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| | |||| |||||| || || ||||||||||||||| || ||||| | Sbjct 20990 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 20931 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || ||| |||| || ||||| ||| || || || || |||||||| || || || Sbjct 20930 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 20871 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| Sbjct 20870 GTCTTAACAAAAATTTGCAT 20851 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| | |||| |||||| || || ||||||||||||||| || ||||| | Sbjct 21273 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21214 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || ||| |||| || ||||| ||| || || || || |||||||| || || || Sbjct 21213 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21154 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| Sbjct 21153 GTCTTAACAAAAATTTGCAT 21134 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 15224 CCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTC 15283 ||||| | |||| |||||| || || ||||||||||||||| || ||||| | Sbjct 21556 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21497 Query 15284 TTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGA 15343 || ||| |||| || ||||| ||| || || || || |||||||| || || || Sbjct 21496 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21437 Query 15344 GTTTTTACAAAAATTTGCAT 15363 || || |||||||||||||| Sbjct 21436 GTCTTAACAAAAATTTGCAT 21417 >seq2465 Length=325902 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| ||||||| || || || || |||||| ||||||||||| ||||||| Sbjct 16914 TTACCAGCAAATATCAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTG 16973 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 || || ||| |||| || || || | ||||| || || || || ||||| || || Sbjct 16974 CTTTTCACATTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTT 17033 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | ||||| |||||||| ||||| Sbjct 17034 AATGTTTTCACAAAAATCTGCAT 17056 >seq1696 Length=245 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||||||||||||| || ||||||||||||||| || |||||| Sbjct 113 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCTTTATCCTGTATTTTG 54 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 | ||||||| | ||||| ||||| |||||| || ||||| || ||||| Sbjct 53 CCCTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362166094658829