Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2465 127 5e-24 seq1187 125 2e-23 seq827 123 6e-23 >seq2465 Length=325902 Score = 127 bits (140), Expect = 5e-24 Identities = 116/144 (81%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || || ||||| |||| || || ||||||||||| || ||||| ||||||||||| ||| Sbjct 17878 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 17936 Query 104477 GCTTTT-ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 ||||| |||||||| | ||| || ||||| || |||||||| ||||| || ||||| Sbjct 17937 ACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 17996 Query 104536 AAGTGTTTTTACAAATATCTGCAT 104559 |||||| || || ||||||||||| Sbjct 17997 AAGTGTCTTCACGAATATCTGCAT 18020 >seq1187 Length=25466 Score = 125 bits (138), Expect = 2e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || | |||||||| || || ||||| |||||||||||||| || Sbjct 20379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 20320 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || |||||||| | ||| || || || || || |||||||| || || ||||| Sbjct 20319 CCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 20260 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 || ||||| |||||||||||||||||| Sbjct 20259 AGAGTTTTGACAAATATCTGCATTTTG 20233 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| |||| ||||||||| || || || |||||||| || |||||||| | Sbjct 20708 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 20649 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | ||||| || || || || |||||||| || || || || | Sbjct 20648 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 20589 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| |||||||||||||| Sbjct 20588 GTTTTCACAAATATCTGCAT 20569 Score = 105 bits (116), Expect = 2e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | || ||||| || || |||||||| |||||||| || || || Sbjct 22124 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22065 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 |||||||| |||| ||||| |||||||| || | ||| || || || |||||||| Sbjct 22064 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTTATTGTTTTTCCAGTAAGA 22005 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || || || || |||||| Sbjct 22004 GTCTTAACGAAAATTTGCATT 21984 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | || ||||| || || ||||||||||||||||| || || || Sbjct 20990 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 20931 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | ||||| ||||| || || | ||| || || || ||||| || Sbjct 20930 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 20871 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| || |||||| Sbjct 20870 GTCTTAACAAAAATTTGCATT 20850 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | || ||||| || || ||||||||||||||||| || || || Sbjct 21273 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21214 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | ||||| ||||| || || | ||| || || || ||||| || Sbjct 21213 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21154 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| || |||||| Sbjct 21153 GTCTTAACAAAAATTTGCATT 21133 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | || ||||| || || ||||||||||||||||| || || || Sbjct 21556 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21497 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | ||||| ||||| || || | ||| || || || ||||| || Sbjct 21496 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21437 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| || |||||| Sbjct 21436 GTCTTAACAAAAATTTGCATT 21416 Score = 96.9 bits (106), Expect = 8e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| | | |||||||| || || |||||||| |||||||| || || || Sbjct 21839 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21780 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | ||||| ||||| || || | ||| || || || ||||| || Sbjct 21779 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21720 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| || |||||| Sbjct 21719 GTCTTAACAAAAATTTGCATT 21699 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| || | | || ||||| || || ||||||||||||||||| || || || Sbjct 22407 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 22348 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | ||||| ||||| || || | ||| || || || ||||| || Sbjct 22347 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 22288 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| || |||||| Sbjct 22287 GTCTTAACAAAAATTTGCATT 22267 >seq827 Length=57960 Score = 123 bits (136), Expect = 6e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| || | ||||||||| || || ||||| |||||||||||||| || Sbjct 31745 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 31804 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 |||| |||||||| | | || ||||| || || || ||||| || || ||||| Sbjct 31805 CCTTTCACATTTTCAATTGAGTCTAAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 31864 Query 104537 AGTGTTTTTACAAATATCTGCATTTT 104562 || ||||| ||||||||||||||||| Sbjct 31865 AGAGTTTTCACAAATATCTGCATTTT 31890 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| |||| ||||||||| || || || |||||||| || |||||||| | Sbjct 31416 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 31475 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 ||||||||||| | ||||| || || || || |||||||| || || || || | Sbjct 31476 TTTACATTTTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 31535 Query 104540 GTTTTTACAAATATCTGCAT 104559 ||||| |||||||||||||| Sbjct 31536 GTTTTCACAAATATCTGCAT 31555 Score = 111 bits (122), Expect = 4e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 ||||||||||| || | ||||||||| ||||| ||||| || ||||| |||||||| || Sbjct 29629 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 29688 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || ||||| || || ||||| ||||| || || | || || ||||| ||||| || Sbjct 29689 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTCTTCCCAGTTAGG 29748 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| || |||||| Sbjct 29749 GTCTTAACAAAAATTTGCATT 29769 Score = 104 bits (114), Expect = 5e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || ||||||||||| | | |||||||| || || ||||| |||||||| ||||| Sbjct 30774 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30833 Query 104474 TTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCA 104533 || |||| |||||||||| ||||| |||||||| || | || || || || ||| Sbjct 30834 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 30893 Query 104534 GTAAGTGTTTTTACAAATATCTGCATT 104560 ||||| || || || || || |||||| Sbjct 30894 GTAAGGGTCTTAACGAAAATTTGCATT 30920 Score = 102 bits (112), Expect = 2e-16 Identities = 111/145 (77%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||||||||| | | |||||||| || || ||||| |||||||| ||||| || Sbjct 30213 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 30272 Query 104477 GCTTTTACATTTTCTACGGTATC-GCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 |||| |||||||||| ||||| | || ||||||| || | || || || || ||||| Sbjct 30273 CCTTTCACATTTTCTATTGTATCAGATA-GTTCTACTTCCAAAGTTATTGTTTTTCCAGT 30331 Query 104536 AAGTGTTTTTACAAATATCTGCATT 104560 ||| || || || || || |||||| Sbjct 30332 AAGAGTCTTAACGAAAATTTGCATT 30356 Score = 102 bits (112), Expect = 2e-16 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 104414 TGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATC 104473 || || ||||||||||| | | |||||||| || || ||||| |||||||| ||||| Sbjct 30492 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30551 Query 104474 TTTGCTTTTACATTTTCTACGGTATC-GCTAGGTTCTACCTCTAGTGTAATAGTCTTACC 104532 || |||| |||||||||| ||||| | || ||||||| || | || || || || || Sbjct 30552 TTGCCTTTCACATTTTCTATTGTATCAGATA-GTTCTACTTCCAAAGTTATTGTTTTTCC 30610 Query 104533 AGTAAGTGTTTTTACAAATATCTGCATT 104560 |||||| || || || || || |||||| Sbjct 30611 AGTAAGAGTCTTAACGAAAATTTGCATT 30638 Score = 93.3 bits (102), Expect = 1e-13 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104420 CCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT 104479 |||||||| || | | || ||||| || || ||||||||||||||||| || || || Sbjct 55492 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 55551 Query 104480 TTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGT 104539 || |||||||| | ||||| ||||| || || | ||| || || || ||||| || Sbjct 55552 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 55611 Query 104540 GTTTTTACAAATATCTGCATT 104560 || || ||||| || |||||| Sbjct 55612 GTCTTAACAAAAATTTGCATT 55632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151354600445052