Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_005337.1
Length=134431
Score E
Sequences producing significant alignments: (Bits) Value
seq1474 93.3 4e-14
>seq1474
Length=412914
Score = 93.3 bits (102), Expect = 4e-14
Identities = 186/270 (69%), Gaps = 8/270 (3%)
Strand=Plus/Plus
Query 5503 GCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTC 5562
||| ||||| ||||||||| ||| || | |||||| | ||| || | | | |||||
Sbjct 126494 GCCAGTGGAACCGAATCCGGCTGTTCCACGTTCCGTGTTGTCAAG--ATGAGAT-TCTTC 126550
Query 5563 CACA---TCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCC-CGTCT 5618
||| | || || || || || || ||||| || || ||||| || || ||| |
Sbjct 126551 GACAATATTTGGCAAAGCGATTCGTTCACAAATCAGTTGAGCAATTCGATCACCACGT-T 126609
Query 5619 TTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGT 5678
| || | ||||| | || ||| || ||||| | | || || || ||||| | ||| |
Sbjct 126610 TCACGTGAAAATCTTGGTCGCCAAAATTGAAAACAATTACTCCAACATTGCCCCTGTAAT 126669
Query 5679 CGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGG 5738
| || |||| ||||||||||| | |||||| ||| || | |||| ||| || || |
Sbjct 126670 CTGCATCTACAACGCCCGCGCCGATGTCGATACCGTGTTTTAAAGCCAAGCCAGATCGAG 126729
Query 5739 GAGCCACGCGGCCGTAGCACCCATCGGGAA 5768
| || | ||| |||||||| || | ||||
Sbjct 126730 GTGCAATGCGACCGTAGCAGCCGACAGGAA 126759
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430038838615928
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |