Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq2680 104 2e-17 seq2465 93.3 4e-14 >seq2680 Length=639 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 |||||| || | || |||||||| || | ||| || || || || | |||||| Sbjct 359 CACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGGCCATCCTC 300 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| |||||| ||||||| | || ||||| ||||| || ||||| || ||||| | Sbjct 299 AAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTG 240 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||||| ||||| || ||| ||||| | | || || || | |||||||| || Sbjct 239 GATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGGTCTT 180 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || | || || |||||||||||||| Sbjct 179 TCCGGTCAAGGTCTTGACAAAGATCTGCAT 150 >seq2465 Length=325902 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931 |||||||||||||||||||||| |||||||| ||||| || || | |||||| || | Sbjct 17885 CAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTACTTTTAA 17944 Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991 | ||| ||||| | | || || || | || || |||||||||||||| || | Sbjct 17945 CATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTAAGTGTCT 18004 Query 94992 TCACAAAGATCTGCAT 95007 |||| || |||||||| Sbjct 18005 TCACGAATATCTGCAT 18020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448274562792840