Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq2680 104 2e-17
seq2465 93.3 4e-14
>seq2680
Length=639
Score = 104 bits (114), Expect = 2e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857
|||||| || | || |||||||| || | ||| || || || || | ||||||
Sbjct 359 CACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGGCCATCCTC 300
Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917
||||| |||||| ||||||| | || ||||| ||||| || ||||| || ||||| |
Sbjct 299 AAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTCCTG 240
Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977
||||| ||||| || ||| ||||| | | || || || | |||||||| ||
Sbjct 239 GATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGGTCTT 180
Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || | || || ||||||||||||||
Sbjct 179 TCCGGTCAAGGTCTTGACAAAGATCTGCAT 150
>seq2465
Length=325902
Score = 93.3 bits (102), Expect = 4e-14
Identities = 102/136 (75%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 94872 CAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGA 94931
|||||||||||||||||||||| |||||||| ||||| || || | |||||| || |
Sbjct 17885 CAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTACTTTTAA 17944
Query 94932 CGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTT 94991
| ||| ||||| | | || || || | || || |||||||||||||| || |
Sbjct 17945 CATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTAAGTGTCT 18004
Query 94992 TCACAAAGATCTGCAT 95007
|||| || ||||||||
Sbjct 18005 TCACGAATATCTGCAT 18020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448274562792840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |