Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq2733 199 6e-47
seq2780 154 2e-33
seq2969 147 3e-31
seq2695 138 2e-28
>seq2733
Length=214928
Score = 199 bits (220), Expect = 6e-47
Identities = 208/273 (76%), Gaps = 0/273 (0%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491
||| ||||||||||||| | |||||| ||||| |||||||||||||| ||||| |||||
Sbjct 56210 CGCGAAGCGTCATCGCAAAGTTCTTCGTGATAATATCCAAGGAATCACGAAGCCTGCTAT 56151
Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551
|| || |||| ||||||||||| || |||||| || || ||| | |||||||| |
Sbjct 56150 TCGACGATTGGCACGTCGTGGTGGTGTGAAGCGTATCAGCGGCTTGATTTATGAAGAAAC 56091
Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611
||||| ||| |||||| |||||| | | ||| | | ||||||| | ||| |||
Sbjct 56090 TCGTGCTGTATTGAAGTCCTTCCTTGAAAATGTTGTTCGTGATGCTGTAACGTATTGCGA 56031
Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671
|||||||| | || ||||| || |||||||| | || ||||| |||||| | |||||
Sbjct 56030 ACACGCTAAGAGGAAAACTGTTACAGCCATGGATGTTGTTTATGCGTTGAAAAGACAAGG 55971
Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTC 16704
||| | |||||||| || || |||||| |||
Sbjct 55970 CCGAACCATTTATGGATTCGGTGGTTAATTTTC 55938
>seq2780
Length=204389
Score = 154 bits (170), Expect = 2e-33
Identities = 190/260 (73%), Gaps = 0/260 (0%)
Strand=Plus/Minus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|||||||||||| | | | | | || ||||| || |||||||| || |||||||| ||
Sbjct 115418 GCTAAGCGTCATAGAAAAGTTTTGCGTGATAATATTCAAGGAATAACAAAGCCAGCAATT 115359
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| ||| |||| ||||||||||| || |||||| | || || || | ||||||||||
Sbjct 115358 CGGCGTTTGGCACGTCGTGGTGGTGTAAAGCGTATTTCCGGTTTAATATATGAAGAGACC 115299
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|||| |||||||| || | | | |||| | | |||||| | ||| |||
Sbjct 115298 CGTGCAGTTTTGAAAGCTTTTTTGGAAAACGTTGTTCGTGATGCAGTTACCTACTGCGAA 115239
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || |||||||||||||| || | |||||| | || ||||| | ||||||||||||
Sbjct 115238 CATGCGAAACGTAAGACTGTTACAGCAATGGATGTGGTGTATGCGCTAAAACGTCAAGGC 115179
Query 16673 CGTAAGATTTATGGTTTTGG 16692
|| | ||||| || || ||
Sbjct 115178 CGAACTATTTACGGCTTCGG 115159
>seq2969
Length=602142
Score = 147 bits (162), Expect = 3e-31
Identities = 195/271 (72%), Gaps = 0/271 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| || || ||||||| | | || |||||||| ||||||||||| || || || ||
Sbjct 120276 GCAAAACGCCATCGCAAGGTTTTGCGTGATAACATTCAAGGAATCACGAAACCGGCAATT 120335
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
|| || ||||||| |||||||| || ||||| || || ||| |||||||||| | |
Sbjct 120336 CGACGATTGGCTCGACGTGGTGGTGTGAAGCGGATCAGCGGCTTGATCTATGAAGAAACT 120395
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | ||| ||||| | || || | | || | | |||||| || ||| ||
Sbjct 120396 CGAGCTGTGTTGAAAACTTTTCTTGAAAATATTGTTCGAGATGCTGTCACCTACTGTGAA 120455
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || ||| | || || || ||| | |||||| | ||||||||||||||| | |||||
Sbjct 120456 CATGCCAAAAGAAAAACCGTTACCGCGATGGATGTTGTCTATGCATTGAAAAGACAAGGT 120515
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAATCTT 16703
|| | |||||||||||||| |||||| ||
Sbjct 120516 CGAACCATTTATGGTTTTGGTGGTTAATTTT 120546
>seq2695
Length=230403
Score = 138 bits (152), Expect = 2e-28
Identities = 195/273 (71%), Gaps = 1/273 (0%)
Strand=Plus/Plus
Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492
|| ||||||||||| | | | || |||||||| || |||||||| || || || ||
Sbjct 7834 GCCAAGCGTCATCGTAAGGTTTTGCGTGATAACATTCAGGGAATCACGAAACCGGCAATT 7893
Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552
||||| |||| || ||||||||||| || || | || ||| | |||||||| | |
Sbjct 7894 CGTCGATTGGCCCGCCGTGGTGGAGTGAAACGGATAAGCGGCTTGATTTATGAAGAAACT 7953
Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612
|| | || ||||| |||||| ||| ||| | | |||||| || ||| |||
Sbjct 7954 CGAGCCGTGTTGAAATCCTTCCTTGAGAATGTTGTTCGCGATGCTGTCACTTATTGCGAA 8013
Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672
|| || ||| | ||||| ||||| | |||||| | || ||||| |||||| | |||||
Sbjct 8014 CATGCGAAAAGGAAGACCGTCACGGCAATGGATGTAGTATATGCGTTGAAAAGACAAGGG 8073
Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA-TCTTC 16704
|| | || |||||||| || ||||| |||||
Sbjct 8074 CGAACCATCTATGGTTTCGGTGGTTAACTCTTC 8106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79072485422517
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |