Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq2810 91.5 1e-13 >seq2810 Length=199988 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 147113 CACGGTGAATTGAATCGTGTTTGCTGCGGGTTTGGTTCTCAAATAGTACATGCCCGTTTT 147172 ||||||||||||||| | | |||| || |||||||||||||||||||| || ||||| Sbjct 181999 CACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTT 182058 Query 147173 TAAACCCTTTTCCCAAGAATAGTCGTGAATGGATGATAAAACTTT---ATAGGTTGGATT 147229 | |||||| | ||| ||| || || |||| || ||| ||| | || | Sbjct 182059 CAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAA---TTTAGCATAATTCGGCTC 182115 Query 147230 GGCCACAAAAAGATTGAGCGATTGGCTCTGATCGATGTAAGGTCCCCGCTCTGCGGCCAT 147289 ||| | || ||| | ||| ||| ||||| ||| | | ||||| || |||||||| Sbjct 182116 GGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCCCCTTTCGGCGGCCAT 182175 Query 147290 GTCCAACACTACTTTTTGTTTAATTTCCCAAGCGGTCTTG 147329 ||| | || ||||| |||||||||| | |||||| Sbjct 182176 GTCTATGACGCACTTTTGGGAAATTTCCCAAACCGTCTTG 182215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478644635641680