Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq2524 132 1e-25
>seq2524
Length=293867
Score = 132 bits (146), Expect = 1e-25
Identities = 163/221 (74%), Gaps = 4/221 (2%)
Strand=Plus/Plus
Query 111314 TTTTCCACTTCTCACAACAAAGCGAACATATTGGAAGGGAATTGTCGAAGAACTTCTGTG 111373
||||||||| || |||||||| || | ||||| ||| | ||||||||||| || ||
Sbjct 136036 TTTTCCACTGCTTACAACAAAACGCGTCTTTTGGAGAGGAGTGGTCGAAGAACTGCTTTG 136095
Query 111374 GTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGA 111433
||| || | ||||| || ||||| || | ||| ||| || ||||| || ||||||||
Sbjct 136096 GTTCATCAGTGGAAGCACCAATGCTAAACAGCTTTCAGAGAAGAATGTCAACATTTGGGA 136155
Query 111434 TGGAAATGGATCACGTGACTTTCTAGATTCAGT--TGGTCTTGTCGACAACGAAGAAGGT 111491
||||||| || | || || ||||| |||| || || | | | |||||||||
Sbjct 136156 TGGAAATTCTTCCAGAGAATTCCTAGA--CAGTAGAGGACTGTACAATTATGAAGAAGGT 136213
Query 111492 GATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGG 111532
||| | || || ||||| || || |||||||||||||||||
Sbjct 136214 GATTTGGGGCCTGTTTATGGTTTCCAATGGCGCCACTTTGG 136254
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303304020021758
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |