Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq2429 122 6e-23
seq1533 122 6e-23
seq947 122 6e-23
seq1187 105 4e-18
seq1398 104 2e-17
seq2680 98.7 7e-16
seq1464 95.1 8e-15
seq827 91.5 1e-13
seq2465 82.4 5e-11
>seq2429
Length=1774
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 556 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 497
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||| ||||||||||||||||||||||
Sbjct 496 TGATCCATTCATACGCGTCACTAATTAGATGACGA 462
>seq1533
Length=12210
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 3598 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 3539
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||| ||||||||||||||||||||||
Sbjct 3538 TGATCCATTCATACGCGTCACTAATTAGATGACGA 3504
Score = 105 bits (116), Expect = 4e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 917 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 858
Query 20007 GGTAATATTTAGCCTT 20022
||||||||| |||
Sbjct 857 ACGAATATTTAGTCTT 842
>seq947
Length=1324161
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 999987 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 999928
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||| ||||||||||||||||||||||
Sbjct 999927 TGATCCATTCATACGCGTCACTAATTAGATGACGA 999893
Score = 122 bits (134), Expect = 6e-23
Identities = 84/95 (88%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||||||||||||||||||||| | ||||| ||
Sbjct 1002395 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGAAGGAATCTTGT 1002336
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||| ||||||||||||||||||||||
Sbjct 1002335 TGATCCATTCATACGCGTCACTAATTAGATGACGA 1002301
>seq1187
Length=25466
Score = 105 bits (116), Expect = 4e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 917 CTCTCTCTTCAGAGTTCTTTTCAACTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGT 858
Query 20007 GGTAATATTTAGCCTT 20022
||||||||| |||
Sbjct 857 ACGAATATTTAGTCTT 842
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237
|| ||||| || || || |||||||| | |||| |||||||||||| ||| ||
Sbjct 20708 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 20649
Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297
|| ||||| | | |||||| |||||||| | |||||| ||||| || |||||
Sbjct 20648 TTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 20589
Query 38298 GTTTTCACGAATATCTGCAT 38317
|||||||| |||||||||||
Sbjct 20588 GTTTTCACAAATATCTGCAT 20569
Score = 84.2 bits (92), Expect = 1e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| || || ||||||||||||| || | || ||||| ||| ||||||
Sbjct 20379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 20320
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
||||||||| | | || ||| || ||||| | |||||| ||||| || |||
Sbjct 20319 CCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 20260
Query 38295 AAGGTTTTCACGAATATCTGCATGTT 38320
| ||||| || ||||||||||| ||
Sbjct 20259 AGAGTTTTGACAAATATCTGCATTTT 20234
>seq1398
Length=270
Score = 104 bits (114), Expect = 2e-17
Identities = 69/77 (90%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 89 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTACGGTACTTGTTGACTATCGGTCTCGT 148
Query 20007 GGTAATATTTAGCCTTA 20023
| ||||||||||||
Sbjct 149 GCCGGTATTTAGCCTTA 165
>seq2680
Length=639
Score = 98.7 bits (108), Expect = 7e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148
||||||| | | ||| | |||||||||||| ||| ||||| || || ||||| || |
Sbjct 378 TACCACCACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTG 319
Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208
|| ||| | || || | || ||||||||||| || || | || || || | |
Sbjct 318 CCAGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTG 259
Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268
||| || || |||||| ||||| ||||||||| | || || ||| || || |
Sbjct 258 GGATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTCCA 199
Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317
| || || || || || || || |||||||| || || || ||||||||
Sbjct 198 CCTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150
>seq1464
Length=13558
Score = 95.1 bits (104), Expect = 8e-15
Identities = 75/90 (83%), Gaps = 5/90 (6%)
Strand=Plus/Minus
Query 25907 CGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATA-----GGGGGTAATCTCGTTAATC 25961
|||| ||||||||||||||||||||||||||||||| | ||||| ||| |||
Sbjct 3817 CGTTTCCTTGGCTGTGGTTTCGCTAGATAGTAGATAAAGACAGAAAGAATCTTGTTGATC 3758
Query 25962 CTTTCATGCGCGTCACTAATTAGATGACGA 25991
| ||||| ||||||||||||||||||||||
Sbjct 3757 CATTCATACGCGTCACTAATTAGATGACGA 3728
>seq827
Length=57960
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 38178 CCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGC 38237
|| ||||| || || || |||||||| | |||| |||||||||||| ||| ||
Sbjct 31416 CCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGCTT 31475
Query 38238 TTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCAAG 38297
|| ||||| | | |||||| |||||||| | |||||| ||||| || |||||
Sbjct 31476 TTTACATTTTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 31535
Query 38298 GTTTTCACGAATATCTGCAT 38317
|||||||| |||||||||||
Sbjct 31536 GTTTTCACAAATATCTGCAT 31555
Score = 91.5 bits (100), Expect = 1e-13
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | ||||||||| ||||| ||||| ||||||||||| ||||| || ||||| |||
Sbjct 31557 CCACCGCGCAAACGCAAAACCAAGTGAAGCGTGCTCTCCTTCTGAATGTTATAATCGGAC 31616
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAA 38185
||| |||| |||| || || ||||| || | |||
Sbjct 31617 AAAGTACGTCCGTCTTCCAACTGTTTGCCTGAAAA 31651
>seq2465
Length=325902
Score = 82.4 bits (90), Expect = 5e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 38175 TTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTT 38234
|| || ||||| |||| | ||| ||||| | || | |||||| || ||| ||||||
Sbjct 17878 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 17937
Query 38235 TGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTC 38294
|| ||||| | || || ||| ||||||||||| ||| |||||||| || ||
Sbjct 17938 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 17997
Query 38295 AAGGTTTTCACGAATATCTGCAT 38317
| || |||||||||||||||||
Sbjct 17998 AGTGTCTTCACGAATATCTGCAT 18020
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334935080040239
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |