Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq2810 120 4e-22
seq2603 82.4 1e-10
>seq2810
Length=199988
Score = 120 bits (132), Expect = 4e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 63746 GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 63805
||||| || || ||||||| | || ||||||| | | | ||||||| || |||
Sbjct 184582 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGGTATAAATCATCAATC 184641
Query 63806 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 63865
|| || || || | |||||| ||||||||||| | ||| |||||||| | |||||
Sbjct 184642 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 184701
Query 63866 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 63925
| | ||||| |||||||||| |||||| ||||| | ||||| || |||| | ||
Sbjct 184702 AATGTCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 184761
Query 63926 TCCAATTCTACCGTTGTTACACCATTATA 63954
|||||||| || ||||| ||||| | |||
Sbjct 184762 TCCAATTCGACAGTTGTCACACCTTGATA 184790
Score = 116 bits (128), Expect = 5e-21
Identities = 154/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900
|| |||| ||||||||||| | | ||| || || || | | ||||||||| ||
Sbjct 181994 TTATCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 182053
Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960
||||| ||||| |||| ||||| |||||||| || | ||| | |||| ||||
Sbjct 182054 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 182113
Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020
|| ||||| || ||||||| || || |||||| ||||| |||||||| || || |||
Sbjct 182114 TCGGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCCCCTTTCGGCGGCC 182173
Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAA 62054
|| | ||| | |||||| | |||||||||||
Sbjct 182174 ATGTCTATGACGCACTTTTGGGAAATTTCCCAAA 182207
Score = 107 bits (118), Expect = 2e-18
Identities = 155/216 (72%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 62984 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACAC 63043
|| ||| ||| ||||| || ||||| | || ||| |||||||||||||| || |||
Sbjct 183479 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 183538
Query 63044 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 63102
|||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| ||
Sbjct 183539 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 183597
Query 63103 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162
|| ||| | ||||| || || | ||| ||| ||||| |||||||| || ||
Sbjct 183598 GGCGTAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 183657
Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198
|| | | || || | ||||| |||||||| ||
Sbjct 183658 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 183693
Score = 100 bits (110), Expect = 4e-16
Identities = 105/138 (76%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250
||||||||||||||| || | || | ||||| || | ||| || |||| ||| ||
Sbjct 182420 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 182479
Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310
|| ||||| || ||||||||||| || || |||||||||||||| || |||| ||| ||
Sbjct 182480 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 182539
Query 62311 ACTATTTCTAAGACCGTA 62328
|||||| ||||| ||
Sbjct 182540 CGAATTTCTCAGACCATA 182557
Score = 100 bits (110), Expect = 4e-16
Identities = 174/248 (70%), Gaps = 9/248 (4%)
Strand=Plus/Plus
Query 62398 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62457
||| |||||||| ||||| || || ||| ||| || |||||||| || || |
Sbjct 182698 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGGCCAAACTGTTT 182757
Query 62458 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62517
|| | || ||||| ||||| ||| | ||||| |||||||| || || ||||||||
Sbjct 182758 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 182817
Query 62518 TAG--ATCTTGCG-CTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 62574
| |||| || |||| || | ||||| ||||| | | |||||| || || ||
Sbjct 182818 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATCCGC 182874
Query 62575 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 62634
|||||||| ||||||||||| || |||| ||| | || ||||| |||| || | |
Sbjct 182875 CAATCCTTGCACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 182931
Query 62635 AATAGGAT 62642
|| |||||
Sbjct 182932 AAAAGGAT 182939
>seq2603
Length=690759
Score = 82.4 bits (90), Expect = 1e-10
Identities = 74/93 (80%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416
||| |||||| ||| |||||||| || || |||||||||||||| || |||||||||||
Sbjct 456525 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 456584
Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATT 32449
| || || |||||| || ||||| |||||
Sbjct 456585 CAGCGAAATCAATTCCATAAAGTCGAACGGATT 456617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633608484332400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |