Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2810 120 4e-22 seq2603 82.4 1e-10 >seq2810 Length=199988 Score = 120 bits (132), Expect = 4e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 63746 GAAATAATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATC 63805 ||||| || || ||||||| | || ||||||| | | | ||||||| || ||| Sbjct 184582 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGGTATAAATCATCAATC 184641 Query 63806 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 63865 || || || || | |||||| ||||||||||| | ||| |||||||| | ||||| Sbjct 184642 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 184701 Query 63866 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTG 63925 | | ||||| |||||||||| |||||| ||||| | ||||| || |||| | || Sbjct 184702 AATGTCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 184761 Query 63926 TCCAATTCTACCGTTGTTACACCATTATA 63954 |||||||| || ||||| ||||| | ||| Sbjct 184762 TCCAATTCGACAGTTGTCACACCTTGATA 184790 Score = 116 bits (128), Expect = 5e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 61841 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 61900 || |||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 181994 TTATCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 182053 Query 61901 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 61960 ||||| ||||| |||| ||||| |||||||| || | ||| | |||| |||| Sbjct 182054 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 182113 Query 61961 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62020 || ||||| || ||||||| || || |||||| ||||| |||||||| || || ||| Sbjct 182114 TCGGCTATGTGAATATTCAACGACTGGGATTGATCAATGAATGCTCCCCTTTCGGCGGCC 182173 Query 62021 ATTTTTATAATCGTCTTTTGTGGAATTTCCCAAA 62054 || | ||| | |||||| | ||||||||||| Sbjct 182174 ATGTCTATGACGCACTTTTGGGAAATTTCCCAAA 182207 Score = 107 bits (118), Expect = 2e-18 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 62984 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACAC 63043 || ||| ||| ||||| || ||||| | || ||| |||||||||||||| || ||| Sbjct 183479 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 183538 Query 63044 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 63102 |||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| || Sbjct 183539 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 183597 Query 63103 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63162 || ||| | ||||| || || | ||| ||| ||||| |||||||| || || Sbjct 183598 GGCGTAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 183657 Query 63163 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63198 || | | || || | ||||| |||||||| || Sbjct 183658 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 183693 Score = 100 bits (110), Expect = 4e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||||||||||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 182420 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 182479 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 || ||||| || ||||||||||| || || |||||||||||||| || |||| ||| || Sbjct 182480 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 182539 Query 62311 ACTATTTCTAAGACCGTA 62328 |||||| ||||| || Sbjct 182540 CGAATTTCTCAGACCATA 182557 Score = 100 bits (110), Expect = 4e-16 Identities = 174/248 (70%), Gaps = 9/248 (4%) Strand=Plus/Plus Query 62398 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 62457 ||| |||||||| ||||| || || ||| ||| || |||||||| || || | Sbjct 182698 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGGCCAAACTGTTT 182757 Query 62458 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 62517 || | || ||||| ||||| ||| | ||||| |||||||| || || |||||||| Sbjct 182758 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 182817 Query 62518 TAG--ATCTTGCG-CTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 62574 | |||| || |||| || | ||||| ||||| | | |||||| || || || Sbjct 182818 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATCCGC 182874 Query 62575 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 62634 |||||||| ||||||||||| || |||| ||| | || ||||| |||| || | | Sbjct 182875 CAATCCTTGCACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 182931 Query 62635 AATAGGAT 62642 || ||||| Sbjct 182932 AAAAGGAT 182939 >seq2603 Length=690759 Score = 82.4 bits (90), Expect = 1e-10 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||| |||||| ||| |||||||| || || |||||||||||||| || ||||||||||| Sbjct 456525 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 456584 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATT 32449 | || || |||||| || ||||| ||||| Sbjct 456585 CAGCGAAATCAATTCCATAAAGTCGAACGGATT 456617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633608484332400