Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq2680 104 2e-17
seq1187 87.8 2e-12
seq2706 84.2 2e-11
seq827 82.4 7e-11
>seq2680
Length=639
Score = 104 bits (114), Expect = 2e-17
Identities = 147/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||| | || || || ||||||| | || |||||| ||
Sbjct 378 ATGCAGATTTTTGTCAAGACTCTTACAGGGAAGACCATCACCCTTGAGGTGGAGAGCTCA 437
Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| || || ||||| | || | ||| ||||| || ||||||||||| |||||
Sbjct 438 GACACCATTGACAATGTGAAGGCCAAGATTCAA-GACAAGGAGGGGATTCCACCAGACCA 496
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || |||| ||||||||||| || | || |||| || || ||| || |||||
Sbjct 497 GCAGAGGCTTATCTTTGCCGGCAAGCAGCTCGAGGATGGGCGTACCCTGGCAGACTACAA 556
Query 25178 TATTCAAAAAGAATCCACGCTACA 25201
||| || || || || || || ||
Sbjct 557 TATCCAGAAGGAGTCTACCCTTCA 580
Score = 84.2 bits (92), Expect = 2e-11
Identities = 90/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151
||||| || || || || || ||||||||||| | || |||||||| || || | ||
Sbjct 15 GACAAGGAGGGAATCCCCCCGGACCAACAGCGTCTGATCTTTGCCGGAAAGCAGCTTGAG 74
Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||| ||||| ||| |||||||| || || || |||||||| || ||||| |||||
Sbjct 75 GATGGCCGCACCCTGGCAGATTACAACATCCAGAAGGAATCCACCCTTCATTTGGTGCT 133
>seq1187
Length=25466
Score = 87.8 bits (96), Expect = 2e-12
Identities = 108/144 (75%), Gaps = 8/144 (6%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| ||||
Sbjct 20569 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 20628
Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || | || |||||| | ||| ||||||||||| || ||||| ||
Sbjct 20629 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAA-GACAAAGAAGGCATCCCACCGGA 20684
Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138
||||||||| |||||||||| ||
Sbjct 20685 TCAACAGCGGCTTATTTTTGCTGG 20708
>seq2706
Length=224770
Score = 84.2 bits (92), Expect = 2e-11
Identities = 72/89 (81%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 25100 AGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCG 25159
||||||||||||||| || ||||| | |||||||| || ||||| | ||||||| ||
Sbjct 73298 AGGGATTCCACCTGATCAGCAGCGACTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 73357
Query 25160 CACTGTGGGCGATTACAATATTCAAAAAG 25188
||| || ||||||||||||||| ||||
Sbjct 73358 TACTTTGTCCGATTACAATATTCAGAAAG 73386
>seq827
Length=57960
Score = 82.4 bits (90), Expect = 7e-11
Identities = 107/144 (74%), Gaps = 8/144 (6%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| |||||||| || || ||||| || ||| | || ||| | ||||| ||| | ||
Sbjct 31555 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCATCA 31496
Query 25059 GACACTATCGAGTCACTG----AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|| || || || | || |||||| | ||| ||||||||||| || ||||| ||
Sbjct 31495 GATACAATTGAA--AATGTAAAAAGCAAGAT-TCAA-GACAAAGAAGGCATCCCACCGGA 31440
Query 25115 CCAACAGCGGATTATTTTTGCCGG 25138
||||||||| |||||||||| ||
Sbjct 31439 TCAACAGCGGCTTATTTTTGCTGG 31416
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433312320161735
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |