Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq2680 152 9e-32
seq11 107 4e-18
seq2465 105 1e-17
seq827 105 1e-17
seq1187 104 4e-17
seq378 100 5e-16
>seq2680
Length=639
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | ||||| || || ||||| || || |||||||| || || |
Sbjct 376 CCACCACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCC 317
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | ||||| || | |||||| ||||| || || || || || ||||| |||||
Sbjct 316 AGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 257
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || |||||||| || || || ||||| || ||||||||||||| || ||
Sbjct 256 ATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTCCACC 197
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|||||||||||||| ||||| || | ||||||||| || ||||||||
Sbjct 196 TCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | || | ||| || || ||||| || ||||| || || || |
Sbjct 604 CCACCACGAAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCC 545
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | |||||| || | |||||| ||||| || || || || || ||||| ||||||
Sbjct 544 AGGGTACGCCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGA 485
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| || ||||||||||||||||| ||||| || || |||||||||| || ||
Sbjct 484 ATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACC 425
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || || || || |||||||| || ||||||||
Sbjct 424 TCAAGGGTGATGGTCTTCCCTGTAAGAGTCTTGACAAAAATCTGCAT 378
>seq11
Length=460
Score = 107 bits (118), Expect = 4e-18
Identities = 113/146 (77%), Gaps = 2/146 (1%)
Strand=Plus/Minus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || ||||| | | |||||| || |||||||| |||||||| || || || ||
Sbjct 203 CTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTAT-TT 145
Query 68378 TGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436
|||||| || ||| || || || | || |||||||||||||||||| ||||| || |
Sbjct 144 TGCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGG 85
Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462
| || ||||| ||||| || ||||||
Sbjct 84 TAAGAGTCTTAACGAAAATTTGCATT 59
Score = 93.3 bits (102), Expect = 8e-14
Identities = 91/115 (79%), Gaps = 2/115 (2%)
Strand=Plus/Minus
Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG-ACGGCCTCGATGGTGTCTGCTGA 68407
|||||||| |||||||| || || || |||||||| || ||| || || || | ||
Sbjct 460 GGTGGAATTCCTTCCTTATCCTGTAT-TTTGCCTTTTACATTCTCTATTGTATCAGATGG 402
Query 68408 TTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|||||||||||||||||| ||||| || || || ||||| ||||| || ||||||
Sbjct 401 TTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAAATTTGCATT 347
>seq2465
Length=325902
Score = 105 bits (116), Expect = 1e-17
Identities = 111/146 (76%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || || || | |||||| || || || |||||||||||||| || ||||| ||
Sbjct 17878 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 17937
Query 68379 GCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTG 68438
|| || ||||||||||||| || ||| ||||| | || || |||||||| ||
Sbjct 17938 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 17997
Query 68439 AGGGTCTTGACGAATATCTGCATTAT 68464
|| ||||| |||||||||||||| ||
Sbjct 17998 AGTGTCTTCACGAATATCTGCATAAT 18023
Score = 87.8 bits (96), Expect = 3e-12
Identities = 108/145 (74%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 68319 TTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTT 68378
|| || || ||||| | || || || || |||||||||||||| ||||||||||| |||
Sbjct 16914 TTACCAGCAAATATCAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAAT-TTT 16972
Query 68379 GC-CTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
|| || || || || ||||| | | ||||| ||||| ||||| |||||||| ||
Sbjct 16973 GCTTTTCACATTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGT 17032
Query 68438 GAGGGTCTTGACGAATATCTGCATT 68462
| || || || || |||||||||
Sbjct 17033 TAATGTTTTCACAAAAATCTGCATT 17057
Score = 86.0 bits (94), Expect = 1e-11
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || ||||| | || ||| || || || |||||||||||||| |||||||| ||
Sbjct 17203 CCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTT 17262
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || || || || || | || ||||||||||| ||||| |||||||| || |
Sbjct 17263 TTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAT 17322
Query 68442 GTCTTGACGAATATCTGCAT 68461
|| || || || ||||||||
Sbjct 17323 GTTTTCACAAAAATCTGCAT 17342
>seq827
Length=57960
Score = 105 bits (116), Expect = 1e-17
Identities = 116/152 (76%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371
|| |||||| || || || || | | |||||| || |||||||| || || || |||||
Sbjct 30770 TATCTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 30829
Query 68372 AATCTTTGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTT 68430
||| |||||||| || || || || || | || |||||||||||| || || ||||
Sbjct 30830 AAT-TTTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTT 30888
Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|||| || |||||||| ||||| || ||||||
Sbjct 30889 TTCCAGTAAGGGTCTTAACGAAAATTTGCATT 30920
Score = 96.9 bits (106), Expect = 6e-15
Identities = 114/152 (75%), Gaps = 2/152 (1%)
Strand=Plus/Plus
Query 68312 TAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTG 68371
|| |||||| || || || || | | |||||| || |||||||| || || || |||||
Sbjct 30488 TATCTGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTG 30547
Query 68372 AATCTTTGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTT 68430
||| |||||||| || || || || || | | |||||||||||| || || ||||
Sbjct 30548 AAT-TTTGCCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTT 30606
Query 68431 TTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462
|||| || || ||||| ||||| || ||||||
Sbjct 30607 TTCCAGTAAGAGTCTTAACGAAAATTTGCATT 30638
Score = 89.7 bits (98), Expect = 9e-13
Identities = 109/146 (75%), Gaps = 2/146 (1%)
Strand=Plus/Plus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || || || | | |||||| || |||||||| || || || |||||||| ||
Sbjct 30212 CTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAAT-TT 30270
Query 68378 TGCCTTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCG 68436
|||||| || || || || || | | |||||||||||| || || |||||||| |
Sbjct 30271 TGCCTTTCACATTTTCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCAG 30330
Query 68437 TGAGGGTCTTGACGAATATCTGCATT 68462
| || ||||| ||||| || ||||||
Sbjct 30331 TAAGAGTCTTAACGAAAATTTGCATT 30356
Score = 87.8 bits (96), Expect = 3e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || || | ||||| || || ||||| || ||||| ||||||||||| |
Sbjct 29629 CCAGCAAAAATCAGACGCTGTTGATCTGGAGGAATTCCCTCCTTATCTTGAATCTTCCCT 29688
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || ||| | || || | || ||| |||||||| |||||||| || || || |||
Sbjct 29689 TTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTCTTCCCAGTTAGG 29748
Query 68442 GTCTTGACGAATATCTGCATT 68462
||||| || || || ||||||
Sbjct 29749 GTCTTAACAAAAATTTGCATT 29769
Score = 87.8 bits (96), Expect = 3e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || ||||| | | ||| || || |||||||| ||||| || || || || || |
Sbjct 55492 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 55551
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || || || || || | || ||| |||||||| ||||||||||| || ||||||
Sbjct 55552 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 55611
Query 68442 GTCTTGACGAATATCTGCATT 68462
||||| || || || ||||||
Sbjct 55612 GTCTTAACAAAAATTTGCATT 55632
>seq1187
Length=25466
Score = 104 bits (114), Expect = 4e-17
Identities = 114/152 (75%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 68318 CTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTT 68377
||| || || || || || | |||||| ||||||||||| || || || || ||||| ||
Sbjct 20380 CTTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTT 20321
Query 68378 TGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGT 68437
|||| || || |||||||||| | || ||||||| || |||||||| || ||
Sbjct 20320 ACCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGT 20261
Query 68438 GAGGGTCTTGACGAATATCTGCATTATGCTAT 68469
|| || ||||| |||||||||||| ||| ||
Sbjct 20260 CAGAGTTTTGACAAATATCTGCATTTTGCGAT 20229
Score = 96.9 bits (106), Expect = 6e-15
Identities = 108/142 (76%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || || | ||| || || |||||||| |||||||| || || || ||||||
Sbjct 22124 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTAT-TTTGCC 22066
Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || ||| || || || | || |||||||||||| || || |||||||| || ||
Sbjct 22065 TTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTTATTGTTTTTCCAGTAAG 22006
Query 68441 GGTCTTGACGAATATCTGCATT 68462
||||| ||||| || ||||||
Sbjct 22005 AGTCTTAACGAAAATTTGCATT 21984
Score = 93.3 bits (102), Expect = 8e-14
Identities = 95/124 (77%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 68339 TTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGT 68398
|||||| || |||||||| |||||||| || || || || | || || || || ||
Sbjct 21822 TTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCTTTCACATTTTCAATTGT 21763
Query 68399 GTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTG 68458
|| | || ||| |||||||| ||||||||||| || ||||||||||| || || || ||
Sbjct 21762 ATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGGGTCTTAACAAAAATTTG 21703
Query 68459 CATT 68462
||||
Sbjct 21702 CATT 21699
Score = 87.8 bits (96), Expect = 3e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || || | ||| || || |||||||| ||||| || || || || || |
Sbjct 20990 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 20931
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || || || || || | || ||| |||||||| ||||||||||| || ||||||
Sbjct 20930 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 20871
Query 68442 GTCTTGACGAATATCTGCATT 68462
||||| || || || ||||||
Sbjct 20870 GTCTTAACAAAAATTTGCATT 20850
Score = 87.8 bits (96), Expect = 3e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || || | ||| || || |||||||| ||||| || || || || || |
Sbjct 21273 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21214
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || || || || || | || ||| |||||||| ||||||||||| || ||||||
Sbjct 21213 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21154
Query 68442 GTCTTGACGAATATCTGCATT 68462
||||| || || || ||||||
Sbjct 21153 GTCTTAACAAAAATTTGCATT 21133
Score = 87.8 bits (96), Expect = 3e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || || || || | ||| || || |||||||| ||||| || || || || || |
Sbjct 21556 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21497
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || || || || || | || ||| |||||||| ||||||||||| || ||||||
Sbjct 21496 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21437
Query 68442 GTCTTGACGAATATCTGCATT 68462
||||| || || || ||||||
Sbjct 21436 GTCTTAACAAAAATTTGCATT 21416
Score = 87.8 bits (96), Expect = 3e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || ||||| | | ||| || || |||||||| ||||| || || || || || |
Sbjct 22407 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 22348
Query 68382 TTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGG 68441
|| || || || || || | || ||| |||||||| ||||||||||| || ||||||
Sbjct 22347 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 22288
Query 68442 GTCTTGACGAATATCTGCATT 68462
||||| || || || ||||||
Sbjct 22287 GTCTTAACAAAAATTTGCATT 22267
>seq378
Length=398
Score = 100 bits (110), Expect = 5e-16
Identities = 109/142 (77%), Gaps = 2/142 (1%)
Strand=Plus/Minus
Query 68322 CCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCC 68381
|| || ||||| | | ||| || || |||||||| |||||||| || || || ||||||
Sbjct 254 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTAT-TTTGCC 196
Query 68382 TTG-ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAG 68440
|| || ||| || || || | || |||||||||||||||||| ||||| || || ||
Sbjct 195 TTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAG 136
Query 68441 GGTCTTGACGAATATCTGCATT 68462
||||| ||||| || ||||||
Sbjct 135 AGTCTTAACGAAAATTTGCATT 114
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921588196288680
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