Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1187 86.0 5e-12 seq827 86.0 5e-12 seq2680 84.2 2e-11 >seq1187 Length=25466 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 ||||||| | || || |||||||| ||||| || |||||||||||||| |||||| Sbjct 20710 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 20651 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 ||||| | ||||| || || | | || || || | || | |||||| || |||| Sbjct 20650 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 20591 Query 114361 GAGTTTTTACAAAAATCTGCAT 114382 ||||| ||||| |||||||| Sbjct 20590 ACGTTTTCACAAATATCTGCAT 20569 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 |||||||| | || ||||| ||||| || || ||||| || ||||| || ||| || Sbjct 20379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 20320 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 || | | ||||| |||||| | || || || |||| || | ||||| || ||| Sbjct 20319 CCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 20260 Query 114360 AGAGTTTTTACAAAAATCTGCAT 114382 |||||||| ||||| |||||||| Sbjct 20259 AGAGTTTTGACAAATATCTGCAT 20237 >seq827 Length=57960 Score = 86.0 bits (94), Expect = 5e-12 Identities = 104/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300 ||||||| | || || |||||||| ||||| || |||||||||||||| |||||| Sbjct 31414 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 31473 Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360 ||||| | ||||| || || | | || || || | || | |||||| || |||| Sbjct 31474 TTTTTACATTTTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 31533 Query 114361 GAGTTTTTACAAAAATCTGCAT 114382 ||||| ||||| |||||||| Sbjct 31534 ACGTTTTCACAAATATCTGCAT 31555 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299 |||||||| | || ||||||||||| || || ||||| || ||||| || ||| || Sbjct 31745 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 31804 Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359 ||| | | ||||| | ||| || ||| || |||| || | ||||| || ||| Sbjct 31805 CCTTTCACATTTTCAATTGAGTCTAAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 31864 Query 114360 AGAGTTTTTACAAAAATCTGCAT 114382 |||||||| ||||| |||||||| Sbjct 31865 AGAGTTTTCACAAATATCTGCAT 31887 >seq2680 Length=639 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || ||||| | || ||||| || || ||||||||||| Sbjct 151 ATACCACCACGGAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCT 92 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || || ||| ||||| || || || || |||| ||||||||||||||||| Sbjct 91 GCCAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCCGGG 32 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTT 114298 || || || || ||||| |||||| Sbjct 31 GGGATTCCCTCCTTGTCCTGAATCTT 6 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420119197568028