Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq1187 86.0 5e-12
seq827 86.0 5e-12
seq2680 84.2 2e-11
>seq1187
Length=25466
Score = 86.0 bits (94), Expect = 5e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Minus
Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300
||||||| | || || |||||||| ||||| || |||||||||||||| ||||||
Sbjct 20710 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 20651
Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360
||||| | ||||| || || | | || || || | || | |||||| || ||||
Sbjct 20650 TTTTTACATTTTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 20591
Query 114361 GAGTTTTTACAAAAATCTGCAT 114382
||||| ||||| ||||||||
Sbjct 20590 ACGTTTTCACAAATATCTGCAT 20569
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299
|||||||| | || ||||| ||||| || || ||||| || ||||| || ||| ||
Sbjct 20379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 20320
Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359
|| | | ||||| |||||| | || || || |||| || | ||||| || |||
Sbjct 20319 CCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 20260
Query 114360 AGAGTTTTTACAAAAATCTGCAT 114382
|||||||| ||||| ||||||||
Sbjct 20259 AGAGTTTTGACAAATATCTGCAT 20237
>seq827
Length=57960
Score = 86.0 bits (94), Expect = 5e-12
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 114241 TACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTT 114300
||||||| | || || |||||||| ||||| || |||||||||||||| ||||||
Sbjct 31414 TACCAGCAAAAATAAGCCGCTGTTGATCCGGTGGGATGCCTTCTTTGTCTTGAATCTTGC 31473
Query 114301 GTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCA 114360
||||| | ||||| || || | | || || || | || | |||||| || ||||
Sbjct 31474 TTTTTACATTTTCAATTGTATCTGATGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 31533
Query 114361 GAGTTTTTACAAAAATCTGCAT 114382
||||| ||||| ||||||||
Sbjct 31534 ACGTTTTCACAAATATCTGCAT 31555
Score = 82.4 bits (90), Expect = 6e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 114240 TTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTT 114299
|||||||| | || ||||||||||| || || ||||| || ||||| || ||| ||
Sbjct 31745 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 31804
Query 114300 TGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTC 114359
||| | | ||||| | ||| || ||| || |||| || | ||||| || |||
Sbjct 31805 CCTTTCACATTTTCAATTGAGTCTAAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 31864
Query 114360 AGAGTTTTTACAAAAATCTGCAT 114382
|||||||| ||||| ||||||||
Sbjct 31865 AGAGTTTTCACAAATATCTGCAT 31887
>seq2680
Length=639
Score = 84.2 bits (92), Expect = 2e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || ||||| | || ||||| || || |||||||||||
Sbjct 151 ATACCACCACGGAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCT 92
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| || || ||| ||||| || || || || |||| |||||||||||||||||
Sbjct 91 GCCAGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCCGGG 32
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTT 114298
|| || || || ||||| ||||||
Sbjct 31 GGGATTCCCTCCTTGTCCTGAATCTT 6
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420119197568028
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |