Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq827 111 4e-19
seq2680 109 1e-18
seq1187 98.7 2e-15
seq2696 93.3 1e-13
>seq827
Length=57960
Score = 111 bits (122), Expect = 4e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || ||||||||||||||| ||| ||||| ||||||||||| |||||
Sbjct 31745 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 31804
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||||| ||||| || || || | ||| ||||| || || || || ||||| |||
Sbjct 31805 CCTTTCACATTTTCAATTGAGTCTAAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 31864
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
||||| || || ||||||||||||
Sbjct 31865 AGAGTTTTCACAAATATCTGCATT 31888
Score = 89.7 bits (98), Expect = 1e-12
Identities = 107/144 (74%), Gaps = 6/144 (4%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || |||||||||||||| |||| || ||||| || ||||| || || |||
Sbjct 29629 CCAGCAAAAATCAGACGCTGTTG---ATCTGGAGGAATTCCCTCCTTATCTTGAATCTTC 29685
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
||||||| || || | || ||| | ||| ||||| | |||||| |||||||| ||
Sbjct 29686 CCTTTCACATTCTCAACAGTATCAGATGGTTCCACTTCCAACGTGATGGTCTTCCCAGTT 29745
Query 288451 AGAGTCTTGACGAATATCTGCATT 288474
|| ||||| || || || ||||||
Sbjct 29746 AGGGTCTTAACAAAAATTTGCATT 29769
Score = 87.8 bits (96), Expect = 4e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||| ||| || ||| ||| ||||||||||||||||| |||||| ||
Sbjct 55492 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 55551
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| ||||| || | ||| | ||| ||||| | ||||| || || || || ||
Sbjct 55552 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 55611
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| || || || ||||||
Sbjct 55612 GTCTTAACAAAAATTTGCATT 55632
>seq2680
Length=639
Score = 109 bits (120), Expect = 1e-18
Identities = 163/230 (71%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | ||| || | ||||| ||| ||| || ||||| || ||||| ||
Sbjct 376 CCACCACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCC 317
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | || ||||| || ||||| || | ||| || ||||
Sbjct 316 AGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 257
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423
|| || || || ||||||||||| || ||||| || || || | || |||| ||
Sbjct 256 ATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTC---TCC 200
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || | ||||| ||||| ||||||| |||||||| || ||||||||
Sbjct 199 ACCTCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150
Score = 87.8 bits (96), Expect = 4e-12
Identities = 158/230 (69%), Gaps = 6/230 (3%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || || | || || || |||| || || || |||||||| ||||| ||
Sbjct 604 CCACCACGAAGACGGAGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCC 545
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || || || | || || || || ||||| || | ||| || |||
Sbjct 544 AGGGTACGCCCATCCTCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGA 485
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423
|| || || || || || || || || ||||| || || || | || |||| ||
Sbjct 484 ATCCCCTCCTTGTCTTGAATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTC---TCC 428
Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473
|| || || ||||| |||||||| || ||||||||||| || ||||||||
Sbjct 427 ACCTCAAGGGTGATGGTCTTCCCTGTAAGAGTCTTGACAAAAATCTGCAT 378
Score = 84.2 bits (92), Expect = 5e-11
Identities = 106/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| ||||| | ||| || | ||||| ||| ||| || ||||| || || || ||
Sbjct 148 CCACCACGGAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCC 89
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| ||||| || || || | || ||||| || ||||||||||||||||| |||
Sbjct 88 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCCGGGGGG 29
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGC 288392
||||| || || ||||| || || ||
Sbjct 28 ATTCCCTCCTTGTCCTGAATCTTGGC 3
>seq1187
Length=25466
Score = 98.7 bits (108), Expect = 2e-15
Identities = 110/147 (75%), Gaps = 0/147 (0%)
Strand=Plus/Minus
Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390
|| || || || |||||||| |||||| ||| ||||| ||||||||||| |||||
Sbjct 20379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 20320
Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450
| ||||| ||||| || | || | || ||||| || || || || ||||| |||
Sbjct 20319 CCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 20260
Query 288451 AGAGTCTTGACGAATATCTGCATTATG 288477
||||| ||||| |||||||||||| ||
Sbjct 20259 AGAGTTTTGACAAATATCTGCATTTTG 20233
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||||||| || ||| ||| ||||||||||||||||| |||||| ||
Sbjct 20990 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 20931
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| ||||| || | ||| | ||| ||||| | ||||| || || || || ||
Sbjct 20930 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 20871
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| || || || ||||||
Sbjct 20870 GTCTTAACAAAAATTTGCATT 20850
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||||||| || ||| ||| ||||||||||||||||| |||||| ||
Sbjct 21273 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21214
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| ||||| || | ||| | ||| ||||| | ||||| || || || || ||
Sbjct 21213 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21154
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| || || || ||||||
Sbjct 21153 GTCTTAACAAAAATTTGCATT 21133
Score = 93.3 bits (102), Expect = 1e-13
Identities = 105/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||||||| || ||| ||| ||||||||||||||||| |||||| ||
Sbjct 21556 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21497
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| ||||| || | ||| | ||| ||||| | ||||| || || || || ||
Sbjct 21496 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21437
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| || || || ||||||
Sbjct 21436 GTCTTAACAAAAATTTGCATT 21416
Score = 87.8 bits (96), Expect = 4e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393
|| || || |||| ||| || ||| ||| ||||||||||||||||| |||||| ||
Sbjct 22407 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 22348
Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453
||||| ||||| || | ||| | ||| ||||| | ||||| || || || || ||
Sbjct 22347 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 22288
Query 288454 GTCTTGACGAATATCTGCATT 288474
||||| || || || ||||||
Sbjct 22287 GTCTTAACAAAAATTTGCATT 22267
>seq2696
Length=685437
Score = 93.3 bits (102), Expect = 1e-13
Identities = 196/286 (69%), Gaps = 10/286 (3%)
Strand=Plus/Minus
Query 325367 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 325426
||||| || || ||| | ||| ||||||||||||||| || || ||| || ||
Sbjct 370640 CCGAATTGACCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCC 370581
Query 325427 AGGTTCACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCA 325486
| || | ||||| | |||| ||||||| |||||||| || ||| || |||
Sbjct 370580 AAATTTATAATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCA 370521
Query 325487 ACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAA--AGC 325542
||| |||| | ||| || || ||||| || |||| | ||||||||||| |
Sbjct 370520 ACGGAACCAGCAAGCTGAGCGACTTTCACTTC--TCGTTTATCGTTGCGCTTGAAACAAG 370463
Query 325543 TGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCG 325602
|||| | | ||||| ||||| ||| || || |||||||| | ||| |||||||| ||
Sbjct 370462 TGAACAAA--ACTTTTCGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACG 370405
Query 325603 TTCCAGAT-CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 325647
|| || | | || ||||||||| | || |||||||||||
Sbjct 370404 CTCGTTATCCATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 370360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179609525577982
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |