Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq2696 98.7 2e-15
>seq2696
Length=685437
Score = 98.7 bits (108), Expect = 2e-15
Identities = 228/337 (68%), Gaps = 10/337 (3%)
Strand=Plus/Minus
Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496
|| ||||| |||| |||||| || ||| | || || | | || | ||||| ||
Sbjct 370691 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCGAATTGA 370632
Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556
|| ||| | ||| ||||||||||||||| || || ||| || || | || |
Sbjct 370631 CCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATA 370572
Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCG 297616
||||| | |||| ||||||| |||||||| || ||| || |||||| ||||
Sbjct 370571 ATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCA 370512
Query 297617 CTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAA--AGCTGAATATAT 297672
| ||| || || ||||| || |||| | ||||||||||| | |||| | |
Sbjct 370511 GCAAGCTGAGCGACTTTCACTTC--TCGTTTATCGTTGCGCTTGAAACAAGTGAACAAA- 370455
Query 297673 CACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGAT- 297731
||||| ||||| ||| || || |||||||| | ||| |||||||| || || ||
Sbjct 370454 -ACTTTTCGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCTCGTTATC 370396
Query 297732 CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 297768
| | || ||||||||| | || |||||||||||
Sbjct 370395 CATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 370360
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102838046100150
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |