Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2696 98.7 2e-15 >seq2696 Length=685437 Score = 98.7 bits (108), Expect = 2e-15 Identities = 228/337 (68%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 297437 GTGAAAATATATCGTGCACTCGCGTGATCCTTACCACCCTGCAATCTCGAACCGAACTGG 297496 || ||||| |||| |||||| || ||| | || || | | || | ||||| || Sbjct 370691 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCGAATTGA 370632 Query 297497 CCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACG 297556 || ||| | ||| ||||||||||||||| || || ||| || || | || | Sbjct 370631 CCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATA 370572 Query 297557 ATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCG 297616 ||||| | |||| ||||||| |||||||| || ||| || |||||| |||| Sbjct 370571 ATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCA 370512 Query 297617 CTGAACTGTGCAACCTTCACGTCGGTCGTCAA--ATTGCGCTTGAA--AGCTGAATATAT 297672 | ||| || || ||||| || |||| | ||||||||||| | |||| | | Sbjct 370511 GCAAGCTGAGCGACTTTCACTTC--TCGTTTATCGTTGCGCTTGAAACAAGTGAACAAA- 370455 Query 297673 CACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCGTTCCAGAT- 297731 ||||| ||||| ||| || || |||||||| | ||| |||||||| || || || Sbjct 370454 -ACTTTTCGTTGTCCAGGCTTCAAGCCATCAACCATCGAAGGAATGCTACGCTCGTTATC 370396 Query 297732 CGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAA 297768 | | || ||||||||| | || ||||||||||| Sbjct 370395 CATGTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 370360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102838046100150