Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq1838 102 9e-17
seq2725 96.9 4e-15
seq2415 96.9 4e-15
seq380 96.9 4e-15
>seq1838
Length=927364
Score = 102 bits (112), Expect = 9e-17
Identities = 73/84 (87%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 56996 TGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 57055
|| |||| |||||| |||| | |||||||||| |||| |||||||||||||||| ||
Sbjct 394807 TGGAAAAACTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 394866
Query 57056 ACTCACCACTATACTACCGAGGAT 57079
||||||||||||||||||||||||
Sbjct 394867 ACTCACCACTATACTACCGAGGAT 394890
>seq2725
Length=220032
Score = 96.9 bits (106), Expect = 4e-15
Identities = 77/93 (83%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 56986 TTAACGTTTATGAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGAC 57045
|||| | ||| || ||| |||| |||| | |||||||||| |||| ||||||||||
Sbjct 42409 TTAAACTATATAAATAATCAACTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGAC 42350
Query 57046 AGGCGGACATACTCACCACTATACTACCGAGGA 57078
|||||| |||||||||||||||||||||||||
Sbjct 42349 AGGCGGGAATACTCACCACTATACTACCGAGGA 42317
>seq2415
Length=845780
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 602526 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 602467
Query 57067 TACTACCGAGGAT 57079
|||||||||||||
Sbjct 602466 TACTACCGAGGAT 602454
Score = 95.1 bits (104), Expect = 1e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 57005 TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 57064
|||||| |||| | |||||||||| |||| ||||||||||||||| |||| |||||||
Sbjct 601848 TTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGCCCATATTCACCAC 601789
Query 57065 TATACTACCGAGGAT 57079
|||||||||||||||
Sbjct 601788 TATACTACCGAGGAT 601774
>seq380
Length=586333
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066
|||| |||| | |||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 184530 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 184589
Query 57067 TACTACCGAGGATTGA 57082
|||||||||||| |||
Sbjct 184590 TACTACCGAGGACTGA 184605
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543192640014960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |