Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_010276.1
Length=156179
Score E
Sequences producing significant alignments: (Bits) Value
seq2810 116 4e-21
seq2680 114 1e-20
seq1187 87.8 2e-12
seq378 84.2 2e-11
seq11 82.4 8e-11
>seq2810
Length=199988
Score = 116 bits (128), Expect = 4e-21
Identities = 178/254 (70%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 154164 TTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCAC 154223
||| ||||||| |||| || | |||||| |||||| | ||||| || || ||||||
Sbjct 182630 TTTTCAATGCGACATTTCAACGATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCAC 182689
Query 154224 ATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTACGGCCCG 154283
||||| ||||| | || |||| ||| || || | | |||| | ||| || ||
Sbjct 182690 ATGTCATATTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGGCCA 182749
Query 154284 TTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATT 154343
| |||||||||| ||||||||| ||||||||| ||||| || | |||||| ||||
Sbjct 182750 AACTGTTTTGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATT 182809
Query 154344 TGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCA 154403
| || || |||| | | |||| || ||| |||| ||| || | | |||||||
Sbjct 182810 TTCTTATTCAACAATCTAGCTTCTTCGGATTCAAACGGATATCGCATCAAAATAAAAGCA 182869
Query 154404 TCGGCGAGCCCTTG 154417
|| || | |||||
Sbjct 182870 TCCGCCAATCCTTG 182883
Score = 91.5 bits (100), Expect = 1e-13
Identities = 98/130 (75%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 154626 TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTC 154685
||||| |||||||||| ||||| || ||| || || ||||| |||| |||||||
Sbjct 183227 TATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATTC 183286
Query 154686 GATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTT 154745
||||| | ||||| || |||||||| | || |||| ||||| ||||| | ||| |
Sbjct 183287 GATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCAGTTTCAATTTGAGAC 183346
Query 154746 TCAATAATTG 154755
||||||||||
Sbjct 183347 TCAATAATTG 183356
Score = 87.8 bits (96), Expect = 2e-12
Identities = 162/235 (69%), Gaps = 2/235 (1%)
Strand=Plus/Plus
Query 154814 TTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGG 154873
|||||| | |||||||||||| | ||| |||| ||| || ||||| | ||
Sbjct 183475 TTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGG 183534
Query 154874 ACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCA 154933
||||||| |||||| | ||| || | ||| ||||| || | ||| || | |||
Sbjct 183535 GCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCA 183594
Query 154934 CAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATT 154993
| ||||| |||||||| || || || ||||| |||| || ||| ||| |
Sbjct 183595 GAGGGCGTAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTG-TTCTTTTTCGCGT 183653
Query 154994 CAA-AAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCC 155047
||| ||||||| ||||||| |||||||| || || ||||| || || | ||| ||
Sbjct 183654 CAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCGCAAACGCCCC 183708
>seq2680
Length=639
Score = 114 bits (126), Expect = 1e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
|||||| | ||||| || ||||| || || |||||||| ||||| | ||| || | ||
Sbjct 362 AAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGGCCATC 303
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||||||||||| |||||| | || |||| ||||||||| || || || || || || ||
Sbjct 302 CTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTC 243
Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410
|| ||||| ||| ||| || | || || | ||||| || | || | |||
Sbjct 242 CTGGATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGGT 183
Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
||| |||||||| || || || || || |||||
Sbjct 182 CTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150
Score = 104 bits (114), Expect = 2e-17
Identities = 150/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291
|| || || |||| || || || || || || ||||| ||||| | ||| ||| | ||
Sbjct 589 AGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCCATCC 530
Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351
|| ||||||||||||||| | || |||| ||||||||| || ||||| || || || |||
Sbjct 529 TCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCT 470
Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411
|| || || ||| ||| || | || || | ||||| || | || | ||||
Sbjct 469 TGAATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACCTCAAGGGTGATGGTC 410
Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443
|| || || | ||| || || ||||| |||||
Sbjct 409 TTCCCTGTAAGAGTCTTGACAAAAATCTGCAT 378
Score = 102 bits (112), Expect = 8e-17
Identities = 100/129 (78%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290
|||||| | ||||| || ||||| || || |||||||||||||| | |||||| | ||
Sbjct 134 AAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGGCCATC 75
Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350
||||||||||| |||||| | || || ||||| ||||| || || ||||| || || ||
Sbjct 74 CTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCCGGGGGGATTCCCTCCTTGTC 15
Query 64351 TTGTATTTT 64359
|| || ||
Sbjct 14 CTGAATCTT 6
>seq1187
Length=25466
Score = 87.8 bits (96), Expect = 2e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| || || ||||| || || ||||||||||| || || ||||||||
Sbjct 22124 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22065
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|||||| ||| | ||||||| | || ||||| | |||| || || || || | |
Sbjct 22064 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTTATTGTTTTTCCAGTAAGA 22005
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || |||||||||||||||
Sbjct 22004 GTCTTAACGAAAATTTGCATT 21984
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| || || ||||| || || |||||||||||||| || ||||||||
Sbjct 20990 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 20931
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|| ||| || | ||||||| | |||||||| | || | ||| ||||| || |
Sbjct 20930 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 20871
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || || ||||||||||||
Sbjct 20870 GTCTTAACAAAAATTTGCATT 20850
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| || || ||||| || || |||||||||||||| || ||||||||
Sbjct 21273 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21214
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|| ||| || | ||||||| | |||||||| | || | ||| ||||| || |
Sbjct 21213 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21154
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || || ||||||||||||
Sbjct 21153 GTCTTAACAAAAATTTGCATT 21133
Score = 84.2 bits (92), Expect = 2e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363
|| ||| |||| || || ||||| || || |||||||||||||| || ||||||||
Sbjct 21556 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21497
Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423
|| ||| || | ||||||| | |||||||| | || | ||| ||||| || |
Sbjct 21496 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21437
Query 64424 GTTTTTACGAAAATTTGCATT 64444
|| || || ||||||||||||
Sbjct 21436 GTCTTAACAAAAATTTGCATT 21416
>seq378
Length=398
Score = 84.2 bits (92), Expect = 2e-11
Identities = 94/126 (75%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378
|| ||||| || || ||||||||||| || || |||||||| |||||| ||| | |
Sbjct 239 CGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTCTCTATT 180
Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438
|||||| | || ||||| | || | || |||||||| | ||| || |||||||||
Sbjct 179 GTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAAATT 120
Query 64439 TGCATT 64444
||||||
Sbjct 119 TGCATT 114
>seq11
Length=460
Score = 82.4 bits (90), Expect = 8e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Minus
Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359
||| || ||| | || | || || || || || ||||||||||| || || ||||||||
Sbjct 203 CTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 144
Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419
|||||| ||| | ||||||| | || ||||| | || | || ||||||||
Sbjct 143 GCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGT 84
Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444
| ||| || |||||||||||||||
Sbjct 83 AAGAGTCTTAACGAAAATTTGCATT 59
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499626256932360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |