Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq2810 116 4e-21 seq2680 114 1e-20 seq1187 87.8 2e-12 seq378 84.2 2e-11 seq11 82.4 8e-11 >seq2810 Length=199988 Score = 116 bits (128), Expect = 4e-21 Identities = 178/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 154164 TTTGCAATGCGCAATTTTAAATCTGCCCAATTCCACAAGTTGGTAGGTTGCACGTTCCAC 154223 ||| ||||||| |||| || | |||||| |||||| | ||||| || || |||||| Sbjct 182630 TTTTCAATGCGACATTTCAACGATTCCCAATCCCACAAATCCGTAGGCTGAACATTCCAC 182689 Query 154224 ATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACTATAACTAGAGTACGGCCCG 154283 ||||| ||||| | || |||| ||| || || | | |||| | ||| || || Sbjct 182690 ATGTCATATTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGGCCA 182749 Query 154284 TTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCGGCAATT 154343 | |||||||||| ||||||||| ||||||||| ||||| || | |||||| |||| Sbjct 182750 AACTGTTTTGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATT 182809 Query 154344 TGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAATCCCAATATACAAAAAGCA 154403 | || || |||| | | |||| || ||| |||| ||| || | | ||||||| Sbjct 182810 TTCTTATTCAACAATCTAGCTTCTTCGGATTCAAACGGATATCGCATCAAAATAAAAGCA 182869 Query 154404 TCGGCGAGCCCTTG 154417 || || | ||||| Sbjct 182870 TCCGCCAATCCTTG 182883 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 154626 TATTGCACAATTTCTGCGCACAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTC 154685 ||||| |||||||||| ||||| || ||| || || ||||| |||| ||||||| Sbjct 183227 TATTGAACAATTTCTGTGCACAGGTTTGAACATTTTATAGTACCCAGATTTTGCTGATTC 183286 Query 154686 GATTTGATGTTGCATGCGTCTTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTT 154745 ||||| | ||||| || |||||||| | || |||| ||||| ||||| | ||| | Sbjct 183287 GATTTTCTATTGCACGCATCTTTGTAGACCATAAACGGTGTGCCAGTTTCAATTTGAGAC 183346 Query 154746 TCAATAATTG 154755 |||||||||| Sbjct 183347 TCAATAATTG 183356 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 154814 TTCGTACAGTTTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGG 154873 |||||| | |||||||||||| | ||| |||| ||| || ||||| | || Sbjct 183475 TTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGG 183534 Query 154874 ACACATCAATGACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCA 154933 ||||||| |||||| | ||| || | ||| ||||| || | ||| || | ||| Sbjct 183535 GCACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAATAGATCAGGTATCCA 183594 Query 154934 CAAAGCGTACAACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATT 154993 | ||||| |||||||| || || || ||||| |||| || ||| ||| | Sbjct 183595 GAGGGCGTAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTG-TTCTTTTTCGCGT 183653 Query 154994 CAA-AAAATCATATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCC 155047 ||| ||||||| ||||||| |||||||| || || ||||| || || | ||| || Sbjct 183654 CAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAGACCGCAAACGCCCC 183708 >seq2680 Length=639 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | ||||| || ||||| || || |||||||| ||||| | ||| || | || Sbjct 362 AAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCCAGGGTACGGCCATC 303 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||||||||| |||||| | || |||| ||||||||| || || || || || || || Sbjct 302 CTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGGATACCCTCCTTGTC 243 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || ||||| ||| ||| || | || || | ||||| || | || | ||| Sbjct 242 CTGGATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTCCACCTCCAAGGTGATGGT 183 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| |||||||| || || || || || ||||| Sbjct 182 CTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || || |||| || || || || || || ||||| ||||| | ||| ||| | || Sbjct 589 AGGACAAGGTGAAGGGTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCCATCC 530 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||||||||||||| | || |||| ||||||||| || ||||| || || || ||| Sbjct 529 TCGAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCT 470 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || | ||||| || | || | |||| Sbjct 469 TGAATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCCACCTCAAGGGTGATGGTC 410 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || || || | ||| || || ||||| ||||| Sbjct 409 TTCCCTGTAAGAGTCTTGACAAAAATCTGCAT 378 Score = 102 bits (112), Expect = 8e-17 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | ||||| || ||||| || || |||||||||||||| | |||||| | || Sbjct 134 AAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCCAGGGTGCGGCCATC 75 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 ||||||||||| |||||| | || || ||||| ||||| || || ||||| || || || Sbjct 74 CTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCCGGGGGGATTCCCTCCTTGTC 15 Query 64351 TTGTATTTT 64359 || || || Sbjct 14 CTGAATCTT 6 >seq1187 Length=25466 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || || ||||| || || ||||||||||| || || |||||||| Sbjct 22124 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22065 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 |||||| ||| | ||||||| | || ||||| | |||| || || || || | | Sbjct 22064 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTTATTGTTTTTCCAGTAAGA 22005 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || ||||||||||||||| Sbjct 22004 GTCTTAACGAAAATTTGCATT 21984 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || || ||||| || || |||||||||||||| || |||||||| Sbjct 20990 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 20931 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || ||| || | ||||||| | |||||||| | || | ||| ||||| || | Sbjct 20930 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 20871 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || || |||||||||||| Sbjct 20870 GTCTTAACAAAAATTTGCATT 20850 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || || ||||| || || |||||||||||||| || |||||||| Sbjct 21273 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21214 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || ||| || | ||||||| | |||||||| | || | ||| ||||| || | Sbjct 21213 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21154 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || || |||||||||||| Sbjct 21153 GTCTTAACAAAAATTTGCATT 21133 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 64304 CCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGC 64363 || ||| |||| || || ||||| || || |||||||||||||| || |||||||| Sbjct 21556 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 21497 Query 64364 TTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAA 64423 || ||| || | ||||||| | |||||||| | || | ||| ||||| || | Sbjct 21496 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21437 Query 64424 GTTTTTACGAAAATTTGCATT 64444 || || || |||||||||||| Sbjct 21436 GTCTTAACAAAAATTTGCATT 21416 >seq378 Length=398 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 64319 CGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACT 64378 || ||||| || || ||||||||||| || || |||||||| |||||| ||| | | Sbjct 239 CGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTCTCTATT 180 Query 64379 GTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATT 64438 |||||| | || ||||| | || | || |||||||| | ||| || ||||||||| Sbjct 179 GTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAAATT 120 Query 64439 TGCATT 64444 |||||| Sbjct 119 TGCATT 114 >seq11 Length=460 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 64300 CTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTT 64359 ||| || ||| | || | || || || || || ||||||||||| || || |||||||| Sbjct 203 CTTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTT 144 Query 64360 TTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 |||||| ||| | ||||||| | || ||||| | || | || |||||||| Sbjct 143 GCCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGT 84 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 | ||| || ||||||||||||||| Sbjct 83 AAGAGTCTTAACGAAAATTTGCATT 59 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499626256932360