Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq2680 91.5 1e-13
seq2603 91.5 1e-13
>seq2680
Length=639
Score = 91.5 bits (100), Expect = 1e-13
Identities = 140/196 (71%), Gaps = 4/196 (2%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || || |||||||| || |||||| |||||||| || || |||| |
Sbjct 571 GACTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCCATCCTCGAGCTGCTTGCCGGCA 512
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539
|||| || | ||| ||||| || || || || || ||||| ||| | || | || |
Sbjct 511 AAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCT-TGAATCTTGGCCTTCAC 453
Query 138540 -TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598
|||| | | |||||| | ||||||||| | || | || || || || ||||| |
Sbjct 452 ATTGT-CAATGGTGTCTGAGCTCTCCACCTCAAGGGTGATGGTCTTCCCTGTAAGAGTCT 394
Query 138599 TTACAAAAATCTGCAT 138614
| ||||||||||||||
Sbjct 393 TGACAAAAATCTGCAT 378
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | ||| | || ||||| | | | || ||||| || ||||||||||| |
Sbjct 376 CCACCACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCC 317
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||||| ||||| || || || |||| | |||| || | ||| ||||| || ||
Sbjct 316 AGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 257
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
||||| || ||||| |||||| || | | || | |||||| | |||||||
Sbjct 256 ATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTCCACC 197
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|| | || | || || || |||| || || ||||| ||||||||
Sbjct 196 TCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150
>seq2603
Length=690759
Score = 91.5 bits (100), Expect = 1e-13
Identities = 156/223 (70%), Gaps = 4/223 (2%)
Strand=Plus/Minus
Query 52305 CTGCTGAATGCGTTCGAGCACGTGCCGTGCGTTCGCAAAAAGGCTCAGTGGGCAATGAAG 52364
||| | || ||| ||||| | | |||||||| ||||| || | ||||| ||
Sbjct 457232 CTGTTCAACGCGATCGAGACCATTCCGTGCGTGAAGAAAAAAGCAGACTGGGCTTTGCGC 457173
Query 52365 TGGATCGA-GAGCGACAC-CGCCACGCTGGCCGAGCGCATGGTGGCCTTCGCCATAGTCG 52422
||||||| || || || ||||| || ||| || |||| || ||||| ||||
Sbjct 457172 TGGATCGGTGACCGTCAGTCGCCATTTTG--CGAACGTTTGGTCGCGTTCGCAGCTGTCG 457115
Query 52423 AGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTTTACATTAAAACGAAAGGCATAA 52482
| ||| | || |||||||||||||| || | || || | | |||| | ||| | |
Sbjct 457114 AAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAATTTTCTGGTTGAAAAAGCGCGGCCTGA 457055
Query 52483 TGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGCGACGA 52525
||||||| ||||||||||||||||| |||| || || |||||
Sbjct 457054 TGCCCGGTTTGACGTTCAGCAACGAGCTGATCTCTCGTGACGA 457012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496243982461680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |