Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq11 109 4e-19
seq378 104 2e-17
seq827 100 2e-16
seq2465 91.5 1e-13
seq1187 91.5 1e-13
>seq11
Length=460
Score = 109 bits (120), Expect = 4e-19
Identities = 110/143 (77%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| |||||||||| ||||| || ||||||||||||||| || ||||||
Sbjct 202 TTACCAGCAAATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTG 143
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| ||||||| | ||||| ||||| |||||| || ||||| || ||||| || ||
Sbjct 142 CCTTTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTA 83
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
||||| || || |||||||||||
Sbjct 82 AGAGTCTTAACGAAAATTTGCAT 60
Score = 87.8 bits (96), Expect = 1e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125
||||||||||||||| || ||||||| ||||||| | ||||| ||||| |||
Sbjct 458 TGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACATTCTCTATTGTATCAGATGGTTC 399
Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
||| || ||||| || ||||| || || ||||| || || |||||||||||
Sbjct 398 TACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAACGAAAATTTGCAT 348
>seq378
Length=398
Score = 104 bits (114), Expect = 2e-17
Identities = 107/140 (76%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| |||||||||| || || || ||||||||||||||| || ||||||| |
Sbjct 254 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 195
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|||||| | ||||| ||||| |||||| || ||||| || ||||| || || |||
Sbjct 194 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGA 135
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || || |||||||||||
Sbjct 134 GTCTTAACGAAAATTTGCAT 115
>seq827
Length=57960
Score = 100 bits (110), Expect = 2e-16
Identities = 110/144 (76%), Gaps = 2/144 (1%)
Strand=Plus/Plus
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||||||| ||||| || ||||||||| || || || |||||||
Sbjct 30213 TTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTG 30272
Query 15094 CTTTTTACAATTTCTATAGTATC-GCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152
| ||| ||| ||||||| ||||| | || || |||| || || || || ||||| || ||
Sbjct 30273 CCTTTCACATTTTCTATTGTATCAGATAGTT-CTACTTCCAAAGTTATTGTTTTTCCAGT 30331
Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176
||||| || || |||||||||||
Sbjct 30332 AAGAGTCTTAACGAAAATTTGCAT 30355
Score = 100 bits (110), Expect = 2e-16
Identities = 112/147 (76%), Gaps = 2/147 (1%)
Strand=Plus/Plus
Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090
|| || ||||| | |||||||| ||||| || ||||||||| || || || ||||
Sbjct 30492 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30551
Query 15091 TTGCTTTTTACAATTTCTATAGTATC-GCTATTTTCTACGTCTAAGGTAATGGTTTTACC 15149
|||| ||| ||| ||||||| ||||| | || || |||| || || || || ||||| ||
Sbjct 30552 TTGCCTTTCACATTTTCTATTGTATCAGATAGTT-CTACTTCCAAAGTTATTGTTTTTCC 30610
Query 15150 TGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| ||||| || || |||||||||||
Sbjct 30611 AGTAAGAGTCTTAACGAAAATTTGCAT 30637
Score = 93.3 bits (102), Expect = 3e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 15031 TGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATT 15090
|| || ||||| | |||||||| ||||| || ||||||||| || || || ||||
Sbjct 30774 TGCTTACCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATT 30833
Query 15091 TTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCT 15150
|||| ||| ||| ||||||| ||||| |||||| || || || || ||||| ||
Sbjct 30834 TTGCCTTTCACATTTTCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCA 30893
Query 15151 GTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || |||||||||||
Sbjct 30894 GTAAGGGTCTTAACGAAAATTTGCAT 30919
Score = 87.8 bits (96), Expect = 1e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||| ||||||||| ||| ||||||||| || || || ||||||
Sbjct 31745 TTACCAGCAAAAATCAGACGCTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 31804
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| ||| ||| |||| || | || ||| || || | ||||||||||| || |||
Sbjct 31805 CCTTTCACATTTTCAATTGAGTCTAAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTC 31864
Query 15154 AGAGTTTTTACAAAAATTTGCATATT 15179
|||||||| ||||| || ||||| ||
Sbjct 31865 AGAGTTTTCACAAATATCTGCATTTT 31890
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| |||||||||| || || || |||||||||||| || || ||||| | |
Sbjct 55492 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 55551
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|| ||| |||| || ||||| ||| || || || || |||||||| || || ||
Sbjct 55552 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 55611
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || ||||||||||||||
Sbjct 55612 GTCTTAACAAAAATTTGCAT 55631
>seq2465
Length=325902
Score = 91.5 bits (100), Expect = 1e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| ||||||| ||||| || || |||||| ||||| ||||| |||||||
Sbjct 16914 TTACCAGCAAATATCAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTG 16973
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
||||| ||| |||| || || || | ||||| || || || || ||||| || ||
Sbjct 16974 CTTTTCACATTTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTT 17033
Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176
| ||||| |||||||| |||||
Sbjct 17034 AATGTTTTCACAAAAATCTGCAT 17056
>seq1187
Length=25466
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||||||| ||||| || ||||||||||||||| || ||||| | |
Sbjct 21839 CCAGCAAAAATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTCCCT 21780
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|| ||| |||| || ||||| ||| || || || || |||||||| || || ||
Sbjct 21779 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 21720
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || ||||||||||||||
Sbjct 21719 GTCTTAACAAAAATTTGCAT 21700
Score = 91.5 bits (100), Expect = 1e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| | |||| ||| || || || ||||||||||||||| || ||||||| |
Sbjct 22124 CCAGCAAAAATCAGACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCT 22065
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|||||| | ||||| ||||| |||||| || || || || ||||| || || |||
Sbjct 22064 TTTACATTCTCTATTGTATCAGATGGTTCTACTTCCAATGTTATTGTTTTTCCAGTAAGA 22005
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || || |||||||||||
Sbjct 22004 GTCTTAACGAAAATTTGCAT 21985
Score = 86.0 bits (94), Expect = 4e-12
Identities = 103/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
||||| |||||||||| || || || |||||||||||| || || ||||| | |
Sbjct 22407 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCT 22348
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|| ||| |||| || ||||| ||| || || || || |||||||| || || ||
Sbjct 22347 TTCACATTTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGG 22288
Query 15157 GTTTTTACAAAAATTTGCAT 15176
|| || ||||||||||||||
Sbjct 22287 GTCTTAACAAAAATTTGCAT 22268
Score = 82.4 bits (90), Expect = 5e-11
Identities = 113/157 (72%), Gaps = 1/157 (1%)
Strand=Plus/Minus
Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093
|| ||||| | |||| ||| ||||| ||| ||||||||| || || || ||||||
Sbjct 20379 TTACCAGCAAAAATCAGACGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTA 20320
Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153
| || ||| |||| || || || || || || | ||||||||||| || |||
Sbjct 20319 CCCTTCACATTTTCAATGGTGTCTGAGGGCTCCACTTCCAGTGTAATGGTTTTCCCAGTC 20260
Query 15154 AGAGTTTTTACAAAAATTTGCATATTTGAAATAAATT 15190
|||||||| ||||| || ||||| |||| || ||||
Sbjct 20259 AGAGTTTTGACAAATATCTGCAT-TTTGCGATGAATT 20224
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357379067882165
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |