Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq2680 107 2e-18 >seq2680 Length=639 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||||||| | || || || || || || ||||| || || Sbjct 376 CCACCACGAAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAGTCTGCC 317 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || ||||| ||||| || |||| | | |||||| || || || Sbjct 316 AGGGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATAAGCCTCTGCTGGTCTGGTGGG 257 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| |||||| ||| | | |||| |||||| | ||||| || Sbjct 256 ATACCCTCCTTGTCCTGGATTTTAGCCTTCACATTATCGATGGTGTCTGAGCTCTCCACC 197 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || || ||||||| || || ||||| |||||||| Sbjct 196 TCCAAGGTGATGGTCTTTCCGGTCAAGGTCTTGACAAAGATCTGCAT 150 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || |||||||| || ||| || || ||| || ||||| || || Sbjct 574 GTAGACTCCTTCTGGATATTGTAGTCTGCCAGGGTACGCCCATCCTCGAGCTGCTTGCCG 515 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||| | | |||||| || || || || ||||||||||| || || ||| Sbjct 514 GCAAAGATAAGCCTCTGCTGGTCTGGTGGAATCCCCTCCTTGTCTTGAATCTTGGCCTTC 455 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||||| || || | ||| | || || || || ||||| Sbjct 454 ACATTGTCAATGGTGTCTGAGCTCTCCACCTCAAGGGTGATGGTCTTCCCTGTAAGAGTC 395 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||||||||| Sbjct 394 TTGACAAAAATCTGCAT 378 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||||||| | || || || || || || |||||||| || Sbjct 148 CCACCACGGAGACGAAGCACCAAATGAAGGGTGGATTCCTTCTGGATGTTGTAATCTGCC 89 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| ||| || ||||| ||||| || |||||| ||||| || || || || Sbjct 88 AGGGTGCGGCCATCCTCAAGCTGCTTTCCGGCAAAGATCAGACGCTGTTGGTCCGGGGGG 29 Query 127007 ATGCCCTCCTTGTCC 127021 || |||||||||||| Sbjct 28 ATTCCCTCCTTGTCC 14 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475483152976560