Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24] 2,969 sequences; 47,436,005 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2465 102 7e-17 seq378 87.8 2e-12 seq11 87.8 2e-12 seq827 84.2 2e-11 seq1187 82.4 7e-11 >seq2465 Length=325902 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || |||||||||||||| |||||||||||||| ||| | Sbjct 17210 ATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTTTTCACAT 17269 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | ||| ||||| | || | ||||| || |||| ||||| | Sbjct 17270 TTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 17329 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||| ||||| ||| || Sbjct 17330 CAAAAATCTGCATACCGCCAC 17350 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||| ||||| || || |||||||||||||| ||||||||||| ||| | Sbjct 16924 ATATCAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTGCTTTTCACAT 16983 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | ||||| |||| ||| || || | || | ||||| || |||| ||||| | Sbjct 16984 TTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 17043 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||| ||||| ||| || Sbjct 17044 CAAAAATCTGCATTCCGCCAC 17064 >seq378 Length=398 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| |||||||| || || ||||| ||||| ||||| || ||||| ||| | Sbjct 247 ATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACAT 188 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 |||| || || || | || ||||| | || | |||||||||||| ||||| || | Sbjct 187 TCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAA 128 Query 45328 CAAAAATTTGCAT 45340 | ||||||||||| Sbjct 127 CGAAAATTTGCAT 115 >seq11 Length=460 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| ||||| || ||||| ||||| ||||| ||||| || ||||| ||| | Sbjct 192 ATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACAT 133 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 |||| || || || | || ||||| | || | |||||||||||| ||||| || | Sbjct 132 TCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAA 73 Query 45328 CAAAAATTTGCAT 45340 | ||||||||||| Sbjct 72 CGAAAATTTGCAT 60 >seq827 Length=57960 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| ||||| || ||||| ||||| || ||||||||||||||||| ||| | | Sbjct 30225 ATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTGCCTTTCACATTT 30284 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || || ||||| | ||| | ||||| || || ||||| || || Sbjct 30285 TCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGAGTCTTAACG 30344 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 30345 AAAATTTGCAT 30355 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| ||||| || ||||| ||||| || ||||||||||||||||| ||| | | Sbjct 30507 ATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTGCCTTTCACATTT 30566 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || || ||||| | ||| | ||||| || || ||||| || || Sbjct 30567 TCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGAGTCTTAACG 30626 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 30627 AAAATTTGCAT 30637 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| ||||| || ||||| ||||| || ||||||||||||||||| ||| | | Sbjct 30789 ATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTGCCTTTCACATTT 30848 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || | || ||||| | ||| | ||||| || || || || || || Sbjct 30849 TCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGGGTCTTAACG 30908 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 30909 AAAATTTGCAT 30919 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| |||||||| || || ||||| ||||||||||| || ||||| ||| | Sbjct 55499 ATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCTTTCACAT 55558 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | || ||||| | || | |||||||| || || || || | Sbjct 55559 TTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGGGTCTTAA 55618 Query 45328 CAAAAATTTGCAT 45340 ||||||||||||| Sbjct 55619 CAAAAATTTGCAT 55631 >seq1187 Length=25466 Score = 82.4 bits (90), Expect = 7e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| |||||||| || || ||||| ||||||||||| || ||||| ||| | Sbjct 22400 ATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCTTTCACAT 22341 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | || ||||| | || | |||||||| || || || || | Sbjct 22340 TTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGGGTCTTAA 22281 Query 45328 CAAAAATTTGCAT 45340 ||||||||||||| Sbjct 22280 CAAAAATTTGCAT 22268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451986425031240