Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq2465 102 7e-17
seq378 87.8 2e-12
seq11 87.8 2e-12
seq827 84.2 2e-11
seq1187 82.4 7e-11
>seq2465
Length=325902
Score = 102 bits (112), Expect = 7e-17
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
|||||||||||||||| || |||||||||||||| |||||||||||||| ||| |
Sbjct 17210 ATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTTTTCACAT 17269
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
||| | || || || | ||| ||||| | || | ||||| || |||| ||||| |
Sbjct 17270 TTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 17329
Query 45328 CAAAAATTTGCATCGCGCGAC 45348
||||||| ||||| ||| ||
Sbjct 17330 CAAAAATCTGCATACCGCCAC 17350
Score = 96.9 bits (106), Expect = 3e-15
Identities = 106/141 (75%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
|||||||||| ||||| || || |||||||||||||| ||||||||||| ||| |
Sbjct 16924 ATATCAATCGCTGCTGATCAGGTGGAATGCCTTCTTTGTCTTGAATTTTGCTTTTCACAT 16983
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
||| | ||||| |||| ||| || || | || | ||||| || |||| ||||| |
Sbjct 16984 TTTCAATCGTGTCCGAAGGCTCTACCTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 17043
Query 45328 CAAAAATTTGCATCGCGCGAC 45348
||||||| ||||| ||| ||
Sbjct 17044 CAAAAATCTGCATTCCGCCAC 17064
>seq378
Length=398
Score = 87.8 bits (96), Expect = 2e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
||||||| |||||||| || || ||||| ||||| ||||| || ||||| ||| |
Sbjct 247 ATATCAAACGTTGCTGATCTGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACAT 188
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
|||| || || || | || ||||| | || | |||||||||||| ||||| || |
Sbjct 187 TCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAA 128
Query 45328 CAAAAATTTGCAT 45340
| |||||||||||
Sbjct 127 CGAAAATTTGCAT 115
>seq11
Length=460
Score = 87.8 bits (96), Expect = 2e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
||||||| ||||| || ||||| ||||| ||||| ||||| || ||||| ||| |
Sbjct 192 ATATCAAACGTTGTTGATCCGGTGGAATTCCTTCCTTATCCTGTATTTTGCCTTTTACAT 133
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
|||| || || || | || ||||| | || | |||||||||||| ||||| || |
Sbjct 132 TCTCTATTGTATCAGATGGTTCTACTTCCAAGGTGATCGTTTTGCCGGTAAGAGTCTTAA 73
Query 45328 CAAAAATTTGCAT 45340
| |||||||||||
Sbjct 72 CGAAAATTTGCAT 60
>seq827
Length=57960
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
||||| ||||| || ||||| ||||| || ||||||||||||||||| ||| | |
Sbjct 30225 ATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTGCCTTTCACATTT 30284
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|||| || || || || ||||| | ||| | ||||| || || ||||| || ||
Sbjct 30285 TCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGAGTCTTAACG 30344
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 30345 AAAATTTGCAT 30355
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
||||| ||||| || ||||| ||||| || ||||||||||||||||| ||| | |
Sbjct 30507 ATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTGCCTTTCACATTT 30566
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|||| || || || || ||||| | ||| | ||||| || || ||||| || ||
Sbjct 30567 TCTATTGTATCAGATAGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGAGTCTTAACG 30626
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 30627 AAAATTTGCAT 30637
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269
||||| ||||| || ||||| ||||| || ||||||||||||||||| ||| | |
Sbjct 30789 ATCAAACGTTGTTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTGCCTTTCACATTT 30848
Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329
|||| || || || | || ||||| | ||| | ||||| || || || || || ||
Sbjct 30849 TCTATTGTATCAGATGGTTCTACTTCCAAAGTTATTGTTTTTCCAGTAAGGGTCTTAACG 30908
Query 45330 AAAATTTGCAT 45340
|||||||||||
Sbjct 30909 AAAATTTGCAT 30919
Score = 82.4 bits (90), Expect = 7e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
||||||| |||||||| || || ||||| ||||||||||| || ||||| ||| |
Sbjct 55499 ATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCTTTCACAT 55558
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
||| | || || || | || ||||| | || | |||||||| || || || || |
Sbjct 55559 TTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGGGTCTTAA 55618
Query 45328 CAAAAATTTGCAT 45340
|||||||||||||
Sbjct 55619 CAAAAATTTGCAT 55631
>seq1187
Length=25466
Score = 82.4 bits (90), Expect = 7e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267
||||||| |||||||| || || ||||| ||||||||||| || ||||| ||| |
Sbjct 22400 ATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCCTGTATTTTCCCTTTCACAT 22341
Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327
||| | || || || | || ||||| | || | |||||||| || || || || |
Sbjct 22340 TTTCAATTGTATCAGATGGTTCCACTTCCAATGTGATGGTTTTGCCAGTGAGGGTCTTAA 22281
Query 45328 CAAAAATTTGCAT 45340
|||||||||||||
Sbjct 22280 CAAAAATTTGCAT 22268
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451986425031240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |