Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20nelsoni_20[genbank_20GCA_5F001447455.1_202015-11-24]
2,969 sequences; 47,436,005 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq2603 187 2e-42
seq2680 102 8e-17
>seq2603
Length=690759
Score = 187 bits (206), Expect = 2e-42
Identities = 271/377 (72%), Gaps = 18/377 (5%)
Strand=Plus/Plus
Query 132914 AGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTT 132973
|| ||||||| | || || || ||||||||||| ||||| |||||||| |||||||| |
Sbjct 457007 AGACCTCGTCACGAGAGATCAGCTCGTTGCTGAACGTCAAACCGGGCATCAGGCCGCGCT 457066
Query 132974 TTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGA 133033
|||| | ||| || || | ||||| ||||| |||||||| | ||| ||||| || ||||
Sbjct 457067 TTTTCAACCAGAAAATTGACGCGAAGCTGCCGGAAAAGAAAATGCCTTCGACAGCTGCGA 457126
Query 133034 AAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGG----CGATCCAGCGCAGCGCC 133089
| || |||| || |||| || |||| | || || |||||||||||| |||
Sbjct 457127 ACGCGACCAAACGTTCGC--AAAATGGCGAC--TGACGGTCACCGATCCAGCGCAAAGCC 457182
Query 133090 CATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTC 133149
|| || || |||| || |||||||| || || ||||| ||||| |||| | | | |
Sbjct 457183 CAGTCTGCTTTTTTCTTCACGCACGGAATGGTCTCGATCGCGTTGAACAGA--AAATCAC 457240
Query 133150 TCTTCCGAGGA--ACGCACGTAGGTGTCGAT---GAGGGTCGAATACATTTCCGAGTGTA 133204
|| | ||| ||| | |||||||||||| |||| | |||||||| || || |
Sbjct 457241 GCTCCACCGGATCACGGATGTAGGTGTCGATCAAGAGGCT---GTACATTTCGGAATGGA 457297
Query 133205 CGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTT 133264
| || || ||||| ||||| ||||| || || | || |||||| || || | |||||
Sbjct 457298 CATTTTCTATGGCAATTTGGAAGCCATAGAAAAAACGTGCCTCGGTTACTTGAATTTCTT 457357
Query 133265 GAGCGAAACGCTCGACC 133281
| | || ||||| |||
Sbjct 457358 GCGAAAATCGCTCCACC 457374
>seq2680
Length=639
Score = 102 bits (112), Expect = 8e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || || || | || || || ||||||||| | || || ||| | |
Sbjct 150 ATGCAGATCTTTGTCAAGACCTTGACCGGAAAGACCATCACCTTGGAGGTGGAGAGCTCA 209
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | ||||||| ||||| ||||| || || | |||||
Sbjct 210 GACACCATCGATAATGTGAAGGCTAAAATCCAGGACAAGGAGGGTATCCCACCAGACCAG 269
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| |||| || | || || || ||||| || || | || ||||| |||||||||
Sbjct 270 CAGAGGCTTATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGTACCCTGGCAGACTACAAC 329
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||| |||||| | || || ||||||||||| |||
Sbjct 330 ATCCAGAAGGAATCCACCCTTCATTTGGTGCTTCGT 365
Score = 96.9 bits (106), Expect = 3e-15
Identities = 95/123 (77%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
||||| |||||||| ||| | ||||||||||| || || | || || || ||||| ||
Sbjct 15 GACAAGGAGGGAATCCCCCCGGACCAACAGCGTCTGATCTTTGCCGGAAAGCAGCTTGAG 74
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|| | |||||||| || ||||||||||| |||||| | || || |||||||||||
Sbjct 75 GATGGCCGCACCCTGGCAGATTACAACATCCAGAAGGAATCCACCCTTCATTTGGTGCTT 134
Query 38457 CGT 38459
|||
Sbjct 135 CGT 137
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500154237336960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |